Alligator_sinensis_CCG020787.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG020787.1 T133448_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IKZF3
M08320_2.00 		Homo sapiens
TTCCCNNSB
VSNNGGGAA		 ChIP-seq
Schmitges et al.(2016)
Q9UKT9_2-4.RCADE 		0.806 0.945
IKZF1
M08939_2.00 		Homo sapiens
HYTCCCAV
BTGGGARD		 Misc
Kulakovskiy et al.(2013)
IKZF1_HUMAN.H11MO.0.C 		0.796 0.890
Ikzf1
M08969_2.00 		Mus musculus
HYTCCCAV
BTGGGARD		 Misc
Kulakovskiy et al.(2013)
IKZF1_MOUSE.H11MO.0.C 		0.796 0.890
IKZF1
M10301_2.00 		Homo sapiens
NHBYGGGAAYRYB
VRYRTTCCCRVDN		 Transfac
Matys et al.(2006)
V$IK1_01 		0.796 0.890
IKZF1
M10302_2.00 		Homo sapiens
BNNWTCCCRNNN
NNNYGGGAWNNV		 Transfac
Matys et al.(2006)
V$IK2_01 		0.796 0.890
IKZF1
M10303_2.00 		Homo sapiens
KNYHGGGAAYRYY
RRYRTTCCCDRNM		 Transfac
Matys et al.(2006)
V$IK3_01 		0.796 0.890
IKZF1
M10304_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IK_Q5_01 		0.796 0.890
IKZF1
M10305_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IK_Q5 		0.796 0.890
IKZF1
M10306_2.00 		Homo sapiens
YYTCCCARA
TYTGGGARR		 Transfac
Matys et al.(2006)
V$LYF1_01 		0.796 0.890
IKZF2
M10105_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HELIOSA_01 		0.776 0.857
IKZF2
M10106_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HELIOSA_02 		0.776 0.857
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG020787.1 C2H2 ZF 124 146
Alligator_sinensis_CCG020787.1 C2H2 ZF 152 174
Alligator_sinensis_CCG020787.1 C2H2 ZF 180 202
Alligator_sinensis_CCG020787.1 C2H2 ZF 208 229

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

169 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000005235 Ailuropoda melanoleuca ENSAMEG00000005235 N 0.000
Alligator_sinensis_CCG000203.1 Alligator sinensis Alligator_sinensis_CCG000203.1 N 0.000
USF3 Anolis carolinensis ENSACAG00000006745 N 0.000
Afo_R005482 Aptenodytes forsteri Afo_R005482 N 0.000
ENSP00000420721-D1 Bos grunniens ENSP00000420721-D1 N 0.000
USF3 Bos taurus ENSBTAG00000021000 N 0.000
Brh_R007650 Buceros rhinoceros Brh_R007650 N 0.000
USF3 Callithrix jacchus ENSCJAG00000020264 N 0.000
USF3 Canis familiaris ENSCAFG00000010692 N 0.000
ENSCPOG00000006428 Cavia porcellus ENSCPOG00000006428 N 0.000
ENSCSAG00000006785 Chlorocebus sabaeus ENSCSAG00000006785 N 0.000
usf3 Danio rerio ENSDARG00000077431 N 0.000
USF3 Dasypus novemcinctus ENSDNOG00000040900 N 0.000
USF3 Equus caballus ENSECAG00000024549 N 0.000
USF3 Felis catus ENSFCAG00000004876 N 0.000
ENSFALG00000005129 Ficedula albicollis ENSFALG00000005129 N 0.000
ENSGMOG00000015548 Gadus morhua ENSGMOG00000015548 N 0.000
ENSGALG00000014808 Gallus gallus ENSGALG00000014808 N 0.000
usf3 Gasterosteus aculeatus ENSGACG00000003204 N 0.000
Gfo_R000246 Geospiza fortis Gfo_R000246 N 0.000
USF3 Gorilla gorilla ENSGGOG00000001005 N 0.000
USF3 Homo sapiens ENSG00000176542 N 0.000
ENSSTOG00000029223 Ictidomys tridecemlineatus ENSSTOG00000029223 N 0.000
ENSLACG00000009844 Latimeria chalumnae ENSLACG00000009844 N 0.000
ENSLOCG00000003056 Lepisosteus oculatus ENSLOCG00000003056 N 0.000
USF3 Loxodonta africana ENSLAFG00000009455 N 0.000
ENSP00000420721 Macaca fascicularis ENSP00000420721 N 0.000
ENSMEUG00000005560 Macropus eugenii ENSMEUG00000005560 N 0.000
USF3 Meleagris gallopavo ENSMGAG00000014246 N 0.000
USF3 Monodelphis domestica ENSMODG00000018158 N 0.000
Usf3 Mus musculus ENSMUSG00000068284 N 0.000
USF3 Myotis lucifugus ENSMLUG00000004274 N 0.000
ENSNLEG00000004615 Nomascus leucogenys ENSNLEG00000004615 N 0.000
USF3 Ochotona princeps ENSOPRG00000014253 N 0.000
ENSONIG00000014090 Oreochromis niloticus ENSONIG00000014090 N 0.000
USF3 Oryctolagus cuniculus ENSOCUG00000013550 N 0.000
usf3 Oryzias latipes ENSORLG00000009097 N 0.000
USF3 Otolemur garnettii ENSOGAG00000032665 N 0.000
ENSOARG00000019468 Ovis aries ENSOARG00000019468 N 0.000
USF3 Pan troglodytes ENSPTRG00000030159 N 0.000
ENSPANG00000019193 Papio anubis ENSPANG00000019193 N 0.000
ENSPFOG00000009350 Poecilia formosa ENSPFOG00000009350 N 0.000
Pvit_04479 Pogona vitticeps Pvit_04479 N 0.000
ENSPPYG00000013537 Pongo abelii ENSPPYG00000013537 N 0.000
USF3 Pteropus vampyrus ENSPVAG00000006151 N 0.000
Usf3 Rattus norvegicus ENSRNOG00000027756 N 0.000
ENSSHAG00000006667 Sarcophilus harrisii ENSSHAG00000006667 N 0.000
USF3 Sus scrofa ENSSSCG00000011918 N 0.000
ENSTGUG00000013682 Taeniopygia guttata ENSTGUG00000013682 N 0.000
ENSTGUG00000013363 Taeniopygia guttata ENSTGUG00000013363 N 0.000
USF3 Tursiops truncatus ENSTTRG00000000281 N 0.000
Tal_R000800 Tyto alba Tal_R000800 N 0.000
USF3 Vicugna pacos ENSVPAG00000011950 N 0.000
usf3 Xenopus tropicalis XB-GENE-6459248 N 0.000
ENSXMAG00000010050 Xiphophorus maculatus ENSXMAG00000010050 N 0.000