Brh_R001017 (Buceros rhinoceros)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Brh_R001017 T133497_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IKZF2
M10105_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HELIOSA_01 		0.827 1.000
IKZF2
M10106_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HELIOSA_02 		0.827 1.000
Ikzf1
M08969_2.00 		Mus musculus
HYTCCCAV
BTGGGARD		 Misc
Kulakovskiy et al.(2013)
IKZF1_MOUSE.H11MO.0.C 		0.804 0.924
IKZF1
M08939_2.00 		Homo sapiens
HYTCCCAV
BTGGGARD		 Misc
Kulakovskiy et al.(2013)
IKZF1_HUMAN.H11MO.0.C 		0.804 0.913
IKZF1
M10301_2.00 		Homo sapiens
NHBYGGGAAYRYB
VRYRTTCCCRVDN		 Transfac
Matys et al.(2006)
V$IK1_01 		0.804 0.913
IKZF1
M10302_2.00 		Homo sapiens
BNNWTCCCRNNN
NNNYGGGAWNNV		 Transfac
Matys et al.(2006)
V$IK2_01 		0.804 0.913
IKZF1
M10303_2.00 		Homo sapiens
KNYHGGGAAYRYY
RRYRTTCCCDRNM		 Transfac
Matys et al.(2006)
V$IK3_01 		0.804 0.913
IKZF1
M10304_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IK_Q5_01 		0.804 0.913
IKZF1
M10305_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IK_Q5 		0.804 0.913
IKZF1
M10306_2.00 		Homo sapiens
YYTCCCARA
TYTGGGARR		 Transfac
Matys et al.(2006)
V$LYF1_01 		0.804 0.913
IKZF3
M08320_2.00 		Homo sapiens
TTCCCNNSB
VSNNGGGAA		 ChIP-seq
Schmitges et al.(2016)
Q9UKT9_2-4.RCADE 		0.776 0.837
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Brh_R001017 C2H2 ZF 67 89
Brh_R001017 C2H2 ZF 95 117
Brh_R001017 C2H2 ZF 123 145
Brh_R001017 C2H2 ZF 185 208

Links

Other C2H2 ZF family TFs
Other Buceros rhinoceros TFs

207 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00001p00009420 Amborella trichopoda AMTR_s00001p00009420 I 0.000
AMTR_s00066p00148680 Amborella trichopoda AMTR_s00066p00148680 I 0.000
Aquca_026_00180 Aquilegia coerulea Aquca_026_00180 I 0.000
Al_scaffold_0005_2880 Arabidopsis lyrata Al_scaffold_0005_2880 I 0.000
fgenesh2_kg.4__2522__AT2G43500.1 Arabidopsis lyrata fgenesh2_kg.4__2522__AT2G43500.1 I 0.000
NLP9 Arabidopsis thaliana AT3G59580 I 0.000
AT2G43500 Arabidopsis thaliana AT2G43500 I 0.000
Bostr.25993s0430 Boechera stricta Bostr.25993s0430 I 0.000
Bostr.20903s0181 Boechera stricta Bostr.20903s0181 I 0.000
BRADI4G20730 Brachypodium distachyon BRADI4G20730 I 0.000
Bo6g076560 Brassica oleracea Bo6g076560 I 0.000
Bo3g036620 Brassica oleracea Bo3g036620 I 0.000
Bo4g019840 Brassica oleracea Bo4g019840 I 0.000
Bo4g194380 Brassica oleracea Bo4g194380 I 0.000
Bra000307 Brassica rapa Bra000307 I 0.000
Bra037711 Brassica rapa Bra037711 I 0.000
Bra004767 Brassica rapa Bra004767 I 0.000
Bra003382 Brassica rapa Bra003382 I 0.000
PK00728.1 Cannabis sativa PK00728.1 I 0.000
Cagra.5954s0011 Capsella grandiflora Cagra.5954s0011 I 0.000
Cagra.3706s0034 Capsella grandiflora Cagra.3706s0034 I 0.000
Carubv10016665m.g Capsella rubella Carubv10016665m.g I 0.000
Carubv10022595m.g Capsella rubella Carubv10022595m.g I 0.000
evm.TU.supercontig_9.328 Carica papaya evm.TU.supercontig_9.328 I 0.000
Ca_02703 Cicer arietinum Ca_02703 I 0.000
Ca_13679 Cicer arietinum Ca_13679 I 0.000
Cla013002 Citrullus lanatus Cla013002 I 0.000
Ciclev10018669m.g Citrus clementina Ciclev10018669m.g I 0.000
orange1.1g001774m.g Citrus sinensis orange1.1g001774m.g I 0.000
Cucsa.095510 Cucumis sativus Cucsa.095510 I 0.000
Eucgr.A00040 Eucalyptus grandis Eucgr.A00040 I 0.000
Thhalv10005779m.g Eutrema salsugineum Thhalv10005779m.g I 0.000
Thhalv10001299m.g Eutrema salsugineum Thhalv10001299m.g I 0.000
gene16194-v1.0-hybrid Fragaria vesca gene16194-v1.0-hybrid I 0.000
GLYMA15G03225 Glycine max GLYMA15G03225 I 0.000
GLYMA13G42160 Glycine max GLYMA13G42160 I 0.000
GLYMA12G05390 Glycine max GLYMA12G05390 I 0.000
GLYMA11G13390 Glycine max GLYMA11G13390 I 0.000
Gorai.005G126000 Gossypium raimondii Gorai.005G126000 I 0.000
Gorai.005G013500 Gossypium raimondii Gorai.005G013500 I 0.000
Gorai.011G138700 Gossypium raimondii Gorai.011G138700 I 0.000
MLOC_9982 Hordeum vulgare MLOC_9982 I 0.000
MLOC_66539 Hordeum vulgare MLOC_66539 I 0.000
Lus10008143.g Linum usitatissimum Lus10008143.g I 0.000
Lus10019368.g Linum usitatissimum Lus10019368.g I 0.000
chr3.LjT23H01.20.nc Lotus japonicus chr3.LjT23H01.20.nc I 0.000
chr3.CM0106.760.nc Lotus japonicus chr3.CM0106.760.nc I 0.000
MDP0000239938 Malus domestica MDP0000239938 I 0.000
MDP0000246881 Malus domestica MDP0000246881 I 0.000
MDP0000265619 Malus domestica MDP0000265619 I 0.000
cassava7989.valid.m1 Manihot esculenta cassava7989.valid.m1 I 0.000
MTR_4g068000 Medicago truncatula MTR_4g068000 I 0.000
MTR_2g099350 Medicago truncatula MTR_2g099350 I 0.000
mgf003368m Mimulus guttatus mgf003368m I 0.000
ORGLA11G0080000 Oryza glaberrima ORGLA11G0080000 I 0.000
OGLUM11G08660 Oryza glumaepatula OGLUM11G08660 I 0.000
BGIOSGA034185 Oryza indica BGIOSGA034185 I 0.000
OLONG_006342 Oryza longistaminata OLONG_006342 I 0.000
OMERI11G08010 Oryza meridionalis OMERI11G08010 I 0.000
ONIVA11G08980 Oryza nivara ONIVA11G08980 I 0.000
ORUFI11G09500 Oryza rufipogon ORUFI11G09500 I 0.000
Pavir.J12413 Panicum virgatum Pavir.J12413 I 0.000
PDK_20s1507761g001 Phoenix dactylifera PDK_20s1507761g001 I 0.000
POPTR_0017s04980 Populus trichocarpa POPTR_0017s04980 I 0.000
POPTR_0007s01530 Populus trichocarpa POPTR_0007s01530 I 0.000
Pm022106 Prunus mume Pm022106 I 0.000
PRUPE_ppa000933mg Prunus persica PRUPE_ppa000933mg I 0.000
30000.m000371 Ricinus communis 30000.m000371 I 0.000
SapurV1A.1186s0030 Salix purpurea SapurV1A.1186s0030 I 0.000
Solyc11g045350.1 Solanum lycopersicum Solyc11g045350.1 I 0.000
PGSC0003DMG401005796 Solanum tuberosum PGSC0003DMG401005796 I 0.000
PGSC0003DMG400013140 Solanum tuberosum PGSC0003DMG400013140 I 0.000
TCM_019949 Theobroma cacao TCM_019949 I 0.000
VIT_05s0094g00020 Vitis vinifera VIT_05s0094g00020 I 0.000