Cla018945 (Citrullus lanatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cla018945 T133967_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.811 0.976
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.811 0.976
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla018945 C2H2 ZF 138 159
Cla018945 C2H2 ZF 159 184

Links

Other C2H2 ZF family TFs
Other Citrullus lanatus TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI3G48310 Brachypodium distachyon BRADI3G48310 N 0.000
MLOC_80133 Hordeum vulgare MLOC_80133 N 0.000
OB0054G10020 Oryza brachyantha OB0054G10020 N 0.000
ORGLA02G0203300 Oryza glaberrima ORGLA02G0203300 N 0.000
BGIOSGA008594 Oryza indica BGIOSGA008594 N 0.000
OS02G0608100 Oryza sativa OS02G0608100 N 0.000
Pavir.Ab02304 Panicum virgatum Pavir.Ab02304 N 0.000
Pavir.J27368 Panicum virgatum Pavir.J27368 N 0.000
Si013246m.g Setaria italica Si013246m.g N 0.000
Sb04g025520 Sorghum bicolor Sb04g025520 N 0.000
Traes_4BL_208AF4C7D Triticum aestivum Traes_4BL_208AF4C7D N 0.000
Traes_4DL_A9DA4DCF1 Triticum aestivum Traes_4DL_A9DA4DCF1 N 0.000
TRIUR3_03147 Triticum urartu TRIUR3_03147 N 0.000
GRMZM2G117108 Zea mays GRMZM2G117108 N 0.000