Cmyd_10006949 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10006949 T134299_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IKZF2
M10105_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HELIOSA_01 		0.827 1.000
IKZF2
M10106_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HELIOSA_02 		0.827 1.000
Ikzf1
M08969_2.00 		Mus musculus
HYTCCCAV
BTGGGARD		 Misc
Kulakovskiy et al.(2013)
IKZF1_MOUSE.H11MO.0.C 		0.804 0.924
IKZF1
M08939_2.00 		Homo sapiens
HYTCCCAV
BTGGGARD		 Misc
Kulakovskiy et al.(2013)
IKZF1_HUMAN.H11MO.0.C 		0.804 0.913
IKZF1
M10301_2.00 		Homo sapiens
NHBYGGGAAYRYB
VRYRTTCCCRVDN		 Transfac
Matys et al.(2006)
V$IK1_01 		0.804 0.913
IKZF1
M10302_2.00 		Homo sapiens
BNNWTCCCRNNN
NNNYGGGAWNNV		 Transfac
Matys et al.(2006)
V$IK2_01 		0.804 0.913
IKZF1
M10303_2.00 		Homo sapiens
KNYHGGGAAYRYY
RRYRTTCCCDRNM		 Transfac
Matys et al.(2006)
V$IK3_01 		0.804 0.913
IKZF1
M10304_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IK_Q5_01 		0.804 0.913
IKZF1
M10305_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IK_Q5 		0.804 0.913
IKZF1
M10306_2.00 		Homo sapiens
YYTCCCARA
TYTGGGARR		 Transfac
Matys et al.(2006)
V$LYF1_01 		0.804 0.913
IKZF3
M08320_2.00 		Homo sapiens
TTCCCNNSB
VSNNGGGAA		 ChIP-seq
Schmitges et al.(2016)
Q9UKT9_2-4.RCADE 		0.776 0.837
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10006949 C2H2 ZF 59 81
Cmyd_10006949 C2H2 ZF 118 140
Cmyd_10006949 C2H2 ZF 146 168
Cmyd_10006949 C2H2 ZF 174 197

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

207 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LPERR12G08400 Leersia perrieri LPERR12G08400 N
OBART12G09720 Oryza barthii OBART12G09720 N
OBART12G09840 Oryza barthii OBART12G09840 N
OBART12G09870 Oryza barthii OBART12G09870 N
OB0134G10010 Oryza brachyantha OB0134G10010 N
OB0325G10010 Oryza brachyantha OB0325G10010 N
OB12G18970 Oryza brachyantha OB12G18970 N
ORGLA12G0092700 Oryza glaberrima ORGLA12G0092700 N
ORGLA12G0092600 Oryza glaberrima ORGLA12G0092600 N
OGLUM12G11050 Oryza glumaepatula OGLUM12G11050 N
OGLUM12G11100 Oryza glumaepatula OGLUM12G11100 N
BGIOSGA037293 Oryza indica BGIOSGA037293 N
BGIOSGA037294 Oryza indica BGIOSGA037294 N
BGIOSGA037277 Oryza indica BGIOSGA037277 N
OLONG_017316 Oryza longistaminata OLONG_017316 N
OLONG_012845 Oryza longistaminata OLONG_012845 N
OMERI12G11070 Oryza meridionalis OMERI12G11070 N
ONIVA01G27180 Oryza nivara ONIVA01G27180 N
ONIVA08G15060 Oryza nivara ONIVA08G15060 N
ONIVA12G09980 Oryza nivara ONIVA12G09980 N
OPUNC01G25690 Oryza punctata OPUNC01G25690 N
OPUNC12G08740 Oryza punctata OPUNC12G08740 N
OPUNC12G08870 Oryza punctata OPUNC12G08870 N
ORUFI12G10750 Oryza rufipogon ORUFI12G10750 N
ORUFI12G10910 Oryza rufipogon ORUFI12G10910 N
ORUFI12G10940 Oryza rufipogon ORUFI12G10940 N