Cmyd_10008592 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10008592 T134318_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL11A
M07926_2.00 		Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV		 ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha 		0.825 0.991
BCL11A
M08881_2.00 		Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV		 Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A 		0.825 0.991
BCL11A
M10187_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL11A_02 		0.825 0.991
BCL11B
M04453_2.00 		Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX 		0.806 0.947
BCL11B
M04454_2.00 		Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX 		0.806 0.947
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10008592 C2H2 ZF 92 113
Cmyd_10008592 C2H2 ZF 119 141
Cmyd_10008592 C2H2 ZF 451 473
Cmyd_10008592 C2H2 ZF 479 501
Cmyd_10008592 C2H2 ZF 509 532

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

125 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000015958 Ailuropoda melanoleuca ENSAMEG00000015958 N
Alligator_sinensis_CCG001918.1 Alligator sinensis Alligator_sinensis_CCG001918.1 N
ENSAPLG00000007996 Anas platyrhynchos ENSAPLG00000007996 N
TBPL1 Anolis carolinensis ENSACAG00000000340 N
Afo_R014912 Aptenodytes forsteri Afo_R014912 N
ENSAMXG00000004338 Astyanax mexicanus ENSAMXG00000004338 N
ENSP00000237264-D1 Bos grunniens ENSP00000237264-D1 N
TBPL1 Bos taurus ENSBTAG00000035370 N
Brh_R013449 Buceros rhinoceros Brh_R013449 N
TBPL1 Callithrix jacchus ENSCJAG00000002794 N
Aan_R009770 Calypte anna Aan_R009770 N
ENSCAFG00000000207 Canis familiaris ENSCAFG00000000207 N
ENSCAFG00000029259 Canis familiaris ENSCAFG00000029259 N
TBPL1 Canis familiaris ENSCAFG00000023223 N
TBPL1 Cavia porcellus ENSCPOG00000011899 N
ENSCSAG00000016709 Chlorocebus sabaeus ENSCSAG00000016709 N
TBPL1 Choloepus hoffmanni ENSCHOG00000007544 N
tbpl1 Danio rerio ENSDARG00000036868 N
TBPL1 Dasypus novemcinctus ENSDNOG00000048107 N
TBPL1 Equus caballus ENSECAG00000019486 N
TBPL1 Felis catus ENSFCAG00000022687 N
ENSFALG00000011864 Ficedula albicollis ENSFALG00000011864 N
ENSGMOG00000019484 Gadus morhua ENSGMOG00000019484 N
TBPL1 Gallus gallus ENSGALG00000013981 N
tbpl1 Gasterosteus aculeatus ENSGACG00000010959 N
Gfo_R006438 Geospiza fortis Gfo_R006438 N
TBPL1 Homo sapiens ENSG00000028839 N
ENSSTOG00000006786 Ictidomys tridecemlineatus ENSSTOG00000006786 N
ENSLACG00000000361 Latimeria chalumnae ENSLACG00000000361 N
ENSLOCG00000016230 Lepisosteus oculatus ENSLOCG00000016230 N
TBPL1 Loxodonta africana ENSLAFG00000014064 N
ENSP00000237264 Macaca fascicularis ENSP00000237264 N
ENSMEUG00000006043 Macropus eugenii ENSMEUG00000006043 N
TBPL1 Meleagris gallopavo ENSMGAG00000013114 N
TBPL1 Microcebus murinus ENSMICG00000015740 N
TBPL1 Monodelphis domestica ENSMODG00000017515 N
ENSMPUG00000014801 Mustela putorius furo ENSMPUG00000014801 N
Tbpl1 Mus musculus ENSMUSG00000071359 N
Myotis_brandtii_TBPL1_10035691 Myotis brandtii Myotis_brandtii_TBPL1_10035691 N
TBPL1 Myotis lucifugus ENSMLUG00000002050 N
ENSNLEG00000014649 Nomascus leucogenys ENSNLEG00000014649 N
TBPL1 Ochotona princeps ENSOPRG00000017268 N
ENSONIG00000000447 Oreochromis niloticus ENSONIG00000000447 N
TBPL1 Ornithorhynchus anatinus ENSOANG00000013097 N
TBPL1 Oryctolagus cuniculus ENSOCUG00000007091 N
tbpl1 Oryzias latipes ENSORLG00000016505 N
TBPL1 Otolemur garnettii ENSOGAG00000006622 N
ENSOARG00000014646 Ovis aries ENSOARG00000014646 N
TBPL1 Pan troglodytes ENSPTRG00000018624 N
ENSPANG00000020089 Papio anubis ENSPANG00000020089 N
ENSPSIG00000003645 Pelodiscus sinensis ENSPSIG00000003645 N
ENSPMAG00000002663 Petromyzon marinus ENSPMAG00000002663 N
Pvit_15344 Pogona vitticeps Pvit_15344 N
ENSPPYG00000017023 Pongo abelii ENSPPYG00000017023 N
TBPL1 Procavia capensis ENSPCAG00000001342 N
TBPL1 Pteropus vampyrus ENSPVAG00000000468 N
Tbpl1 Rattus norvegicus ENSRNOG00000011114 N
ENSSHAG00000005937 Sarcophilus harrisii ENSSHAG00000005937 N
TBPL1 Sorex araneus ENSSARG00000005911 N
TBPL1 Sus scrofa ENSSSCG00000022387 N
TBPL1 Taeniopygia guttata ENSTGUG00000011544 N
ENSTSYG00000005756 Tarsius syrichta ENSTSYG00000005756 N
TBPL1 Tupaia belangeri ENSTBEG00000013148 N
TBPL1 Tursiops truncatus ENSTTRG00000009662 N
Tal_R007437 Tyto alba Tal_R007437 N
TBPL1 Vicugna pacos ENSVPAG00000006272 N
tbpl1.L Xenopus laevis XB-GENE-865785 N
tbpl1 Xenopus tropicalis XB-GENE-488460 N
ENSXMAG00000004323 Xiphophorus maculatus ENSXMAG00000004323 N