Cmyd_10017688 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10017688 T134460_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Glis2
M00129_2.00 		Mus musculus
NKACCCCYYNN
NNRRGGGGTMN		 PBM
Badis et al.(2009)
Glis2_1757 		0.811 0.971
GLIS2
M02887_2.00 		Homo sapiens
KACCCCCCRCRDHG
CDHYGYGGGGGGTM		 SELEX
Jolma et al.(2013)
GLIS2_1 		0.811 0.957
GLIS2
M04449_2.00 		Homo sapiens
RCCCCCCRCRWHGH
DCDWYGYGGGGGGY		 SELEX
Yin et al.(2017)
GLIS2_eDBD_HT-SELEX 		0.811 0.957
GLIS2
M04450_2.00 		Homo sapiens
DCWHYGYDGGGGGT
ACCCCCHRCRDWGH		 SELEX
Yin et al.(2017)
GLIS2_eDBD_Methyl-HT-SELEX 		0.811 0.957
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10017688 C2H2 ZF 177 199
Cmyd_10017688 C2H2 ZF 205 229
Cmyd_10017688 C2H2 ZF 235 259

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

45 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000002010 Ailuropoda melanoleuca ENSAMEG00000002010 I 0.811
Alligator_sinensis_CCG004454.1 Alligator sinensis Alligator_sinensis_CCG004454.1 I 0.811
ENSAMXG00000011871 Astyanax mexicanus ENSAMXG00000011871 I 0.772
ENSBTAP00000012119-D1 Bos grunniens ENSBTAP00000012119-D1 I 0.811
GLIS2 Bos taurus ENSBTAG00000009199 I 0.811
GLIS2 Callithrix jacchus ENSCJAG00000019770 I 0.811
GLIS2 Canis familiaris ENSCAFG00000019227 I 0.811
ENSCPOG00000004787 Cavia porcellus ENSCPOG00000004787 I 0.811
ENSCSAG00000009593 Chlorocebus sabaeus ENSCSAG00000009593 I 0.811
GLIS2 Dasypus novemcinctus ENSDNOG00000010899 I 0.795
ENSDORG00000014886 Dipodomys ordii ENSDORG00000014886 I 0.811
GLIS2 Echinops telfairi ENSETEG00000006418 I 0.811
GLIS2 Equus caballus ENSECAG00000020639 I 0.811
GLIS2 Erinaceus europaeus ENSEEUG00000007346 I 0.808
GLIS2 Felis catus ENSFCAG00000011229 I 0.811
GLIS2 Gorilla gorilla ENSGGOG00000004717 I 0.811
GLIS2 Homo sapiens ENSG00000126603 D 0.811
ENSSTOG00000025049 Ictidomys tridecemlineatus ENSSTOG00000025049 I 0.811
ENSLACG00000004164 Latimeria chalumnae ENSLACG00000004164 I 0.811
GLIS2 Loxodonta africana ENSLAFG00000018480 I 0.811
GLIS2 Microcebus murinus ENSMICG00000017817 I 0.811
GLIS2 Monodelphis domestica ENSMODG00000016375 I 0.811
ENSMPUG00000015020 Mustela putorius furo ENSMPUG00000015020 I 0.811
Glis2 Mus musculus ENSMUSG00000014303 D 0.811
Myotis_brandtii_GLIS2_10028036 Myotis brandtii Myotis_brandtii_GLIS2_10028036 I 0.811
GLIS2 Myotis lucifugus ENSMLUG00000008930 I 0.811
ENSNLEG00000009834 Nomascus leucogenys ENSNLEG00000009834 I 0.811
GLIS2 Ochotona princeps ENSOPRG00000000484 I 0.811
GLIS2 Ornithorhynchus anatinus ENSOANG00000010385 I 0.811
GLIS2 Oryctolagus cuniculus ENSOCUG00000012971 I 0.811
GLIS2 Otolemur garnettii ENSOGAG00000015200 I 0.811
ENSOARG00000003260 Ovis aries ENSOARG00000003260 I 0.811
GLIS2 Pan troglodytes ENSPTRG00000007714 I 0.811
Pvit_18995 Pogona vitticeps Pvit_18995 I 0.811
ENSPPYG00000007055 Pongo abelii ENSPPYG00000007055 I 0.811
GLIS2 Procavia capensis ENSPCAG00000011063 I 0.811
GLIS2 Pteropus vampyrus ENSPVAG00000017802 I 0.811
Glis2 Rattus norvegicus ENSRNOG00000004766 I 0.811
ENSSHAG00000010956 Sarcophilus harrisii ENSSHAG00000010956 I 0.811
SINV25327 Solenopsis invicta SINV25327 I 0.762
SPU_010542 Strongylocentrotus purpuratus SPU_010542 I 0.769
GLIS2 Sus scrofa ENSSSCG00000023653 I 0.811
glis2b Tetraodon nigroviridis ENSTNIG00000009741 I 0.811
GLIS2 Tursiops truncatus ENSTTRG00000002711 I 0.811
glis2.L Xenopus laevis XB-GENE-6252690 I 0.805