Gfo_R007548 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R007548 T135753_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF704
M04519_2.00 		Homo sapiens
HRCCGGCCGGYD
HRCCGGCCGGYD		 SELEX
Yin et al.(2017)
ZNF704_FL_HT-SELEX 		0.827 1.000
ZNF704
M04520_2.00 		Homo sapiens
NRCCGGCCGGYN
NRCCGGCCGGYN		 SELEX
Yin et al.(2017)
ZNF704_FL_Methyl-HT-SELEX 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R007548 C2H2 ZF 120 145

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_017350 Acremonium chrysogenum ACRE_017350 I 0.000
BBA_00803 Beauveria bassiana BBA_00803 I 0.000
CHGG_02523 Chaetomium globosum CHGG_02523 I 0.000
CTHT_0065380 Chaetomium thermophilum CTHT_0065380 I 0.000
CPUR_01075 Claviceps purpurea CPUR_01075 I 0.000
CFIO01_12739 Colletotrichum fioriniae CFIO01_12739 I 0.000
CGGC5_3697 Colletotrichum gloeosporioides CGGC5_3697 I 0.000
GLRG_03163 Colletotrichum graminicola GLRG_03163 I 0.000
CH063_14002 Colletotrichum higginsianum CH063_14002 I 0.000
Cob_11908 Colletotrichum orbiculare Cob_11908 I 0.000
CSUB01_04359 Colletotrichum sublineola CSUB01_04359 I 0.000
UCREL1_6424 Eutypa lata UCREL1_6424 I 0.000
FFUJ_02685 Fusarium fujikuroi FFUJ_02685 I 0.000
FGRRES_07157 Fusarium graminearum FGRRES_07157 I 0.000
FOXG_01644 Fusarium oxysporum FOXG_01644 I 0.000
FPSE_04121 Fusarium pseudograminearum FPSE_04121 I 0.000
NechaG84694 Fusarium solani NechaG84694 I 0.000
FVEG_08005 Fusarium verticillioides FVEG_08005 I 0.000
GGTG_00579 Gaeumannomyces graminis GGTG_00579 I 0.000
CMQ_4188 Grosmannia clavigera CMQ_4188 I 0.000
MGG_00729 Magnaporthe oryzae MGG_00729 N 0.000
MAPG_07299 Magnaporthe poae MAPG_07299 I 0.000
MAC_00519 Metarhizium acridum MAC_00519 I 0.000
MANI_109776 Metarhizium anisopliae MANI_109776 I 0.000
MBR_03784 Metarhizium brunneum MBR_03784 I 0.000
MGU_05842 Metarhizium guizhouense MGU_05842 I 0.000
MAJ_02033 Metarhizium majus MAJ_02033 I 0.000
X797_006151 Metarhizium robertsii X797_006151 I 0.000
MYCTH_46530 Myceliophthora thermophila MYCTH_46530 I 0.000
fgenesh1_pg.sca_6_chr9_2_0000157 Nectria haematococca fgenesh1_pg.sca_6_chr9_2_0000157 I 0.000
vib-1 Neurospora crassa NCU03725 D 0.000
estExt_fgenesh2_pg.C_10270 Neurospora discreta estExt_fgenesh2_pg.C_10270 I 0.000
NEUTE1DRAFT_127885 Neurospora tetrasperma NEUTE1DRAFT_127885 I 0.000
PFICI_09469 Pestalotiopsis fici PFICI_09469 I 0.000
PODANS_2_9470 Podospora anserina PODANS_2_9470 I 0.000
SAPIO_CDS10442 Scedosporium apiospermum SAPIO_CDS10442 I 0.000
SMAC_02578 Sordaria macrospora SMAC_02578 I 0.000
SPBR_07260 Sporothrix brasiliensis SPBR_07260 I 0.000
HMPREF1624_06747 Sporothrix schenckii HMPREF1624_06747 I 0.000
S40285_04243 Stachybotrys chlorohalonata S40285_04243 I 0.000
VHEMI01254 Torrubiella hemipterigena VHEMI01254 I 0.000
TRIATDRAFT_145258 Trichoderma atroviride TRIATDRAFT_145258 I 0.000
TRIREDRAFT_54675 Trichoderma reesei TRIREDRAFT_54675 I 0.000
TRIVIDRAFT_114530 Trichoderma virens TRIVIDRAFT_114530 I 0.000
UV8b_2461 Ustilaginoidea virens UV8b_2461 I 0.000
VDBG_04231 Verticillium albo atrum VDBG_04231 I 0.000
VDBG_04231 Verticillium alfalfae VDBG_04231 I 0.000