fgenesh1_pg.scaffold_39000134 (Physcomitrella patens)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 fgenesh1_pg.scaffold_39000134 T139050_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh1_pg.scaffold_191000049
M01473_2.00 		Physcomitrella patens
NNNSCGCCRN
NYGGCGSNNN		 PBM
Najafabadi et al.(2015a)
pTH11165 		0.811 0.970
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_39000134 C2H2 ZF 248 272
fgenesh1_pg.scaffold_39000134 C2H2 ZF 302 325
fgenesh1_pg.scaffold_39000134 C2H2 ZF 354 379

Links

Other C2H2 ZF family TFs
Other Physcomitrella patens TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CAGL0K11902g Candida glabrata CAGL0K11902g I
Ecym_5131 Eremothecium cymbalariae Ecym_5131 I
KAFR_0E01250 Kazachstania africana KAFR_0E01250 I
KNAG_0H01260 Kazachstania naganishii KNAG_0H01260 I
KLLA0_F04213g Kluyveromyces lactis KLLA0_F04213g I
SAKL0D03586g Lachancea kluyveri SAKL0D03586g I
NDAI_0A05750 Naumovozyma dairenensis NDAI_0A05750 I
SU7_0595 Saccharomyces arboricola SU7_0595 I
21342_YDR034C Saccharomyces bayanus 21342_YDR034C I
LYS14 Saccharomyces cerevisiae YDR034C D
SKUD_203807 Saccharomyces kudriavzevii SKUD_203807 I
3344_Multiple Saccharomyces mikatae 3344_Multiple I
AACERI_AaceriABL099W Saccharomycetaceae sp ashbya aceri AACERI_AaceriABL099W I
TBLA_0I01890 Tetrapisispora blattae TBLA_0I01890 I
TPHA_0M01040 Tetrapisispora phaffii TPHA_0M01040 I
Kpol_1061p11 Vanderwaltozyma polyspora Kpol_1061p11 I
ZBAI_04585 Zygosaccharomyces bailii ZBAI_04585 I
ZBAI_06624 Zygosaccharomyces bailii ZBAI_06624 I
ZYRO0A03058g Zygosaccharomyces rouxii ZYRO0A03058g I