CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Bostr.10199s0147
(
Boechera stricta
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Bostr.10199s0147
T142564_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT5G22990
M06821_2.00
Arabidopsis thaliana
WCGWHDTCGWYNHNN
NNDNRWCGAHDWCGW
Dap-seq
OMalley et al.(2016)
AT5G22990_col_a
0.827
0.957
AT2G15740
M06810_2.00
Arabidopsis thaliana
WCGHHDYCGWY
RWCGRHDDCGW
Dap-seq
OMalley et al.(2016)
AT2G15740_col_a
0.825
0.913
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bostr.10199s0147.1.p
C2H2 ZF
233
256
YTCPKCNSVFNTSQKFAAHISSIH
Links
Other
C2H2 ZF
family TFs
Other
Boechera stricta
TFs
22 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy