Cagra.0612s0086 (Capsella grandiflora)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cagra.0612s0086 T142633_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.822 0.935
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.822 0.935
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.772 0.783
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.766 0.717
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.762 0.717
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.762 0.717
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.761 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0612s0086.1.p C2H2 ZF 49 71
Cagra.0612s0086.1.p C2H2 ZF 93 115

Links

Other C2H2 ZF family TFs
Other Capsella grandiflora TFs

313 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g02345 Acanthocheilonema viteae nAv.1.0.1.g02345 I 0.000
ACYPI004122 Acyrthosiphon pisum ACYPI004122 I 0.000
AAEL005773 Aedes aegypti AAEL005773 I 0.000
AAEL009114 Aedes aegypti AAEL009114 I 0.000
ENSAMEG00000017464 Ailuropoda melanoleuca ENSAMEG00000017464 I 0.000
ANCCAN_12876 Ancylostoma caninum ANCCAN_12876 I 0.000
ANCCEY_03871 Ancylostoma ceylanicum ANCCEY_03871 I 0.000
ANCDUO_08422 Ancylostoma duodenale ANCDUO_08422 I 0.000
ACAC_0000280801 Angiostrongylus cantonensis ACAC_0000280801 I 0.000
ACAC_0000916401 Angiostrongylus cantonensis ACAC_0000916401 I 0.000
ACOC_0000287501 Angiostrongylus costaricensis ACOC_0000287501 I 0.000
ACOC_0000576901 Angiostrongylus costaricensis ACOC_0000576901 I 0.000
AALB003342 Anopheles albimanus AALB003342 I 0.000
AALB006472 Anopheles albimanus AALB006472 I 0.000
AARA009759 Anopheles arabiensis AARA009759 I 0.000
AARA010689 Anopheles arabiensis AARA010689 I 0.000
AATE002651 Anopheles atroparvus AATE002651 I 0.000
AATE011186 Anopheles atroparvus AATE011186 I 0.000
ACHR009386 Anopheles christyi ACHR009386 I 0.000
ACHR009508 Anopheles christyi ACHR009508 I 0.000
ACOM033421 Anopheles coluzzii ACOM033421 I 0.000
ACOM040260 Anopheles coluzzii ACOM040260 I 0.000
ACUA012399 Anopheles culicifacies ACUA012399 I 0.000
ACUA026439 Anopheles culicifacies ACUA026439 I 0.000
ADIR000845 Anopheles dirus ADIR000845 I 0.000
ADIR006614 Anopheles dirus ADIR006614 I 0.000
AEPI001685 Anopheles epiroticus AEPI001685 I 0.000
AEPI004310 Anopheles epiroticus AEPI004310 I 0.000
AFAF003862 Anopheles farauti AFAF003862 I 0.000
AFAF016434 Anopheles farauti AFAF016434 I 0.000
AFUN007580 Anopheles funestus AFUN007580 I 0.000
AFUN010654 Anopheles funestus AFUN010654 I 0.000
AGAP000431 Anopheles gambiae AGAP000431 I 0.000
AGAP004050 Anopheles gambiae AGAP004050 I 0.000
AMAM011075 Anopheles maculatus AMAM011075 I 0.000
AMEC001738 Anopheles melas AMEC001738 I 0.000
AMEC008689 Anopheles melas AMEC008689 I 0.000
AMEC017052 Anopheles melas AMEC017052 I 0.000
AMEM007550 Anopheles merus AMEM007550 I 0.000
AMEM010962 Anopheles merus AMEM010962 I 0.000
AMIN002616 Anopheles minimus AMIN002616 I 0.000
AMIN005578 Anopheles minimus AMIN005578 I 0.000
AQUA007978 Anopheles quadriannulatus AQUA007978 I 0.000
AQUA008559 Anopheles quadriannulatus AQUA008559 I 0.000
ASIS020954 Anopheles sinensis ASIS020954 I 0.000
ASTEI01039 Anopheles stephensi ASTEI01039 I 0.000
ASTEI07080 Anopheles stephensi ASTEI07080 I 0.000
GB46471 Apis mellifera GB46471 I 0.000
ALUE_0001538801 Ascaris lumbricoides ALUE_0001538801 I 0.000
ASU_08292 Ascaris suum ASU_08292 I 0.000
ENSAMXG00000018431 Astyanax mexicanus ENSAMXG00000018431 I 0.000
BGIBMGA005108 Bombyx mori BGIBMGA005108 I 0.000
ENSBTAP00000013742-D1 Bos grunniens ENSBTAP00000013742-D1 I 0.000
DMRTA2 Bos taurus ENSBTAG00000010414 I 0.000
e_gw.304.115.1 Branchiostoma floridae e_gw.304.115.1 I 0.000
e_gw.304.55.1 Branchiostoma floridae e_gw.304.55.1 I 0.000
e_gw.768.12.1 Branchiostoma floridae e_gw.768.12.1 I 0.000
e_gw.768.14.1 Branchiostoma floridae e_gw.768.14.1 I 0.000
fgenesh2_pg.scaffold_219000044 Branchiostoma floridae fgenesh2_pg.scaffold_219000044 I 0.000
fgenesh2_pg.scaffold_219000049 Branchiostoma floridae fgenesh2_pg.scaffold_219000049 I 0.000
Bm3257 Brugia malayi Bm3257 I 0.000
BTMF_0000779601 Brugia timori BTMF_0000779601 I 0.000
CBG02496 Caenorhabditis briggsae CBG02496 I 0.000
CBG07603 Caenorhabditis briggsae CBG07603 I 0.000
dmd-4 Caenorhabditis elegans WBGene00007776 D 0.000
dmd-5 Caenorhabditis elegans WBGene00017326 D 0.000
CRE11988 Caenorhabditis remanei CRE11988 I 0.000
CRE15402 Caenorhabditis remanei CRE15402 I 0.000
DMRTA2 Callithrix jacchus ENSCJAG00000021554 I 0.000
Cflo_02163--XP_001122464.1_APIME Camponotus floridanus Cflo_02163--XP_001122464.1_APIME I 0.000
Cflo_02164--XP_001122464.1_APIME Camponotus floridanus Cflo_02164--XP_001122464.1_APIME I 0.000
ENSCPOG00000024909 Cavia porcellus ENSCPOG00000024909 I 0.000
ENSCSAG00000001259 Chlorocebus sabaeus ENSCSAG00000001259 I 0.000
CLEC005903 Cimex lectularius CLEC005903 I 0.000
dmrt1 Ciona intestinalis ENSCING00000005905 I 0.000
ENSCSAVG00000010848 Ciona savignyi ENSCSAVG00000010848 I 0.000
CGI_10001830 Crassostrea gigas CGI_10001830 I 0.000
CGI_10015952 Crassostrea gigas CGI_10015952 I 0.000
CpipJ_CPIJ004057 Culex pipiens CpipJ_CPIJ004057 I 0.000
CPIJ004057 Culex quinquefasciatus CPIJ004057 I 0.000
KGM_01441 Danaus plexippus KGM_01441 I 0.000
KGM_14862 Danaus plexippus KGM_14862 I 0.000
dmrta2 Danio rerio ENSDARG00000039412 I 0.000
DAPPUDRAFT_290549 Daphnia pulex DAPPUDRAFT_290549 I 0.000
DMRTA2 Dasypus novemcinctus ENSDNOG00000041150 I 0.000
YQE_00885 Dendroctonus ponderosae YQE_00885 I 0.000
YQE_11361 Dendroctonus ponderosae YQE_11361 I 0.000
DICVIV_11544 Dictyocaulus viviparus DICVIV_11544 I 0.000
nDi.2.2.2.g00552 Dirofilaria immitis nDi.2.2.2.g00552 I 0.000
DME_0000735001 Dracunculus medinensis DME_0000735001 I 0.000
GF16562 Drosophila ananassae FBgn0093583 I 0.000
GF23361 Drosophila ananassae FBgn0100355 I 0.000
GG11680 Drosophila erecta FBgn0103976 I 0.000
GG24818 Drosophila erecta FBgn0116948 I 0.000
GH14316 Drosophila grimshawi FBgn0121792 I 0.000
GH22853 Drosophila grimshawi FBgn0130310 I 0.000
dsx Drosophila melanogaster FBgn0000504 D 0.000
dmrt99B Drosophila melanogaster FBgn0039683 D 0.000
GI10413 Drosophila mojavensis FBgn0133177 I 0.000
GL13902 Drosophila persimilis FBgn0151507 I 0.000
GA10755 Drosophila pseudoobscura FBgn0070811 I 0.000
GA13771 Drosophila pseudoobscura FBgn0073807 I 0.000
GM10444 Drosophila sechellia FBgn0165392 I 0.000
GM12805 Drosophila sechellia FBgn0167741 I 0.000
GD19445 Drosophila simulans FBgn0190944 I 0.000
GD21451 Drosophila simulans FBgn0192885 I 0.000
dsx Drosophila virilis FBgn0020068 I 0.000
GJ10627 Drosophila virilis FBgn0197906 I 0.000
GK11913 Drosophila willistoni FBgn0213924 I 0.000
GK14297 Drosophila willistoni FBgn0216303 I 0.000
GE11105 Drosophila yakuba FBgn0228931 I 0.000
GE23869 Drosophila yakuba FBgn0241018 I 0.000
EVEC_0001309901 Enterobius vermicularis EVEC_0001309901 I 0.000
ENSFALG00000005353 Ficedula albicollis ENSFALG00000005353 I 0.000
ENSGMOG00000000998 Gadus morhua ENSGMOG00000000998 I 0.000
dmrta2 Gasterosteus aculeatus ENSGACG00000011145 I 0.000
GPUH_0000111201 Gongylonema pulchrum GPUH_0000111201 I 0.000
DMRTA2 Gorilla gorilla ENSGGOG00000013269 I 0.000
HCOI02134800 Haemonchus contortus HCOI02134800 I 0.000
HPLM_0001751901 Haemonchus placei HPLM_0001751901 I 0.000
HHAL005035-PA Halyomorpha halys HHAL005035-PA I 0.000
Hsal_04837--XP_001122464.1_APIME Harpegnathos saltator Hsal_04837--XP_001122464.1_APIME I 0.000
HMEL009964 Heliconius melpomene HMEL009964 I 0.000
HPBE_0000468301 Heligmosomoides bakeri HPBE_0000468301 I 0.000
HelroG148702 Helobdella robusta HelroG148702 I 0.000
Hba_09447 Heterorhabditis bacteriophora Hba_09447 I 0.000
DMRTA2 Homo sapiens ENSG00000142700 D 0.000
ENSSTOG00000024624 Ictidomys tridecemlineatus ENSSTOG00000024624 I 0.000
ISCW007589 Ixodes scapularis ISCW007589 I 0.000
ENSLOCG00000009379 Lepisosteus oculatus ENSLOCG00000009379 I 0.000
LDEC011791 Leptinotarsa decemlineata LDEC011791 I 0.000
LDEC021047 Leptinotarsa decemlineata LDEC021047 I 0.000
nLs.2.1.2.g00134 Litomosoides sigmodontis nLs.2.1.2.g00134 I 0.000
LOAG_04415 Loa loa LOAG_04415 I 0.000
LotgiG80706 Lottia gigantea LotgiG80706 I 0.000
DMRTA2 Loxodonta africana ENSLAFG00000021953 I 0.000
LCUP000660 Lucilia cuprina LCUP000660 I 0.000
LCUP000887 Lucilia cuprina LCUP000887 I 0.000
LLOJ001672 Lutzomyia longipalpis LLOJ001672 I 0.000
MCINX002884 Melitaea cinxia MCINX002884 I 0.000
MCINX014494 Melitaea cinxia MCINX014494 I 0.000
DMRTA2 Monodelphis domestica ENSMODG00000001251 I 0.000
MDOA009630 Musca domestica MDOA009630 I 0.000
MDOA014783 Musca domestica MDOA014783 I 0.000
ENSMPUG00000007160 Mustela putorius furo ENSMPUG00000007160 I 0.000
Dmrta2 Mus musculus ENSMUSG00000047143 I 0.000
NECAME_12944 Necator americanus NECAME_12944 I 0.000
NBR_0001043401 Nippostrongylus brasiliensis NBR_0001043401 I 0.000
OFLC_0000183001 Onchocerca flexuosa OFLC_0000183001 I 0.000
nOo.2.0.1.g04239 Onchocerca ochengi nOo.2.0.1.g04239 I 0.000
WBGene00247409 Onchocerca volvulus WBGene00247409 I 0.000
ENSONIG00000002365 Oreochromis niloticus ENSONIG00000002365 I 0.000
DMRTA2 Oryctolagus cuniculus ENSOCUG00000001019 I 0.000
DMRTA2 Otolemur garnettii ENSOGAG00000026143 I 0.000
ENSOARG00000004283 Ovis aries ENSOARG00000004283 I 0.000
DMRTA2 Pan troglodytes ENSPTRG00000000724 I 0.000
PHUM159230 Pediculus humanus PHUM159230 I 0.000
PHUM334970 Pediculus humanus PHUM334970 I 0.000
ENSPMAG00000003668 Petromyzon marinus ENSPMAG00000003668 I 0.000
PPAI003177 Phlebotomus papatasi PPAI003177 I 0.000
PPAI010078 Phlebotomus papatasi PPAI010078 I 0.000
ENSPFOG00000004939 Poecilia formosa ENSPFOG00000004939 I 0.000
Dmrta2 Rattus norvegicus ENSRNOG00000008105 I 0.000
RSKR_0000121900 Rhabditophanes kr3021 RSKR_0000121900 I 0.000
RPRC008869 Rhodnius prolixus RPRC008869 I 0.000
Sakowv30011616m.g Saccoglossus kowalevskii Sakowv30011616m.g I 0.000
Sakowv30017450m.g Saccoglossus kowalevskii Sakowv30017450m.g I 0.000
SMU15013033 Schmidtea mediterranea SMU15013033 I 0.000
L596_g1050 Steinernema carpocapsae L596_g1050 I 0.000
L596_g654 Steinernema carpocapsae L596_g654 I 0.000
L889_g24171 Steinernema feltiae L889_g24171 I 0.000
L889_g5309 Steinernema feltiae L889_g5309 I 0.000
L893_g20610 Steinernema glaseri L893_g20610 I 0.000
L898_g8928 Steinernema monticolum L898_g8928 I 0.000
L892_g24825 Steinernema scapterisci L892_g24825 I 0.000
L892_g27540 Steinernema scapterisci L892_g27540 I 0.000
SMAR006330 Strigamia maritima SMAR006330 I 0.000
SMAR010524 Strigamia maritima SMAR010524 I 0.000
SPU_001255 Strongylocentrotus purpuratus SPU_001255 I 0.000
SVUK_0001144301 Strongylus vulgaris SVUK_0001144301 I 0.000
DMRTA2 Sus scrofa ENSSSCG00000030552 I 0.000
SMUV_0000545101 Syphacia muris SMUV_0000545101 I 0.000
dmrta2 Takifugu rubripes ENSTRUG00000001824 I 0.000
TELCIR_08488 Teladorsagia circumcincta TELCIR_08488 I 0.000
TELCIR_11295 Teladorsagia circumcincta TELCIR_11295 I 0.000
tetur10g00950 Tetranychus urticae tetur10g00950 I 0.000
TCLT_0000706701 Thelazia callipaeda TCLT_0000706701 I 0.000
TCNE_0001921201 Toxocara canis TCNE_0001921201 I 0.000
TC010058 Tribolium castaneum TC010058 I 0.000
TC010597 Tribolium castaneum TC010597 I 0.000
TriadG9574 Trichoplax adhaerens TriadG9574 I 0.000
TMUE_s0076000800 Trichuris muris TMUE_s0076000800 I 0.000
D918_02021 Trichuris suis D918_02021 I 0.000
TTRE_0000282901 Trichuris trichiura TTRE_0000282901 I 0.000
WUBG_07254 Wuchereria bancrofti WUBG_07254 I 0.000
dmrt1.L Xenopus laevis XB-GENE-864801 I 0.000
dmrta2.S Xenopus laevis XB-GENE-997967 I 0.000
dmrta2 Xenopus tropicalis XB-GENE-997963 D 0.000
ENSXMAG00000003327 Xiphophorus maculatus ENSXMAG00000003327 I 0.000
L798_06391 Zootermopsis nevadensis L798_06391 I 0.000