Cagra.7309s0001 (Capsella grandiflora)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cagra.7309s0001 T142682_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.827 0.957
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.792 0.804
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.772 0.761
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.771 0.761
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.771 0.761
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.761 0.696
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.761 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.7309s0001.1.p C2H2 ZF 35 57
Cagra.7309s0001.1.p C2H2 ZF 83 105

Links

Other C2H2 ZF family TFs
Other Capsella grandiflora TFs

368 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000014907 Ailuropoda melanoleuca ENSAMEG00000014907 I
ENSACAG00000008631 Anolis carolinensis ENSACAG00000008631 I
Afo_R012751 Aptenodytes forsteri Afo_R012751 I
yakG016733 Bos grunniens yakG016733 N
ENSBTAP00000047496-D1 Bos grunniens ENSBTAP00000047496-D1 I
ENSBTAP00000045775-D1 Bos grunniens ENSBTAP00000045775-D1 N
ENSBTAP00000044770-D1 Bos grunniens ENSBTAP00000044770-D1 I
ENSBTAG00000047120 Bos taurus ENSBTAG00000047120 I
ENSBTAG00000033445 Bos taurus ENSBTAG00000033445 I
ENSBTAG00000033874 Bos taurus ENSBTAG00000033874 N
ENSBTAG00000034444 Bos taurus ENSBTAG00000034444 N
ENSBTAG00000036343 Bos taurus ENSBTAG00000036343 I
ENSBTAG00000046035 Bos taurus ENSBTAG00000046035 N
ENSBTAG00000046306 Bos taurus ENSBTAG00000046306 I
ENSCJAG00000032803 Callithrix jacchus ENSCJAG00000032803 I
ENSCAFG00000023067 Canis familiaris ENSCAFG00000023067 I
ENSCAFG00000029639 Canis familiaris ENSCAFG00000029639 I
ENSCPOG00000027550 Cavia porcellus ENSCPOG00000027550 I
ENSCPOG00000021607 Cavia porcellus ENSCPOG00000021607 I
Cmyd_10018130 Chelonia mydas Cmyd_10018130 I
ENSDNOG00000031164 Dasypus novemcinctus ENSDNOG00000031164 I
ENSDNOG00000045058 Dasypus novemcinctus ENSDNOG00000045058 I
ENSECAG00000000093 Equus caballus ENSECAG00000000093 I
ENSECAG00000008677 Equus caballus ENSECAG00000008677 I
ENSECAG00000008708 Equus caballus ENSECAG00000008708 I
ENSECAG00000009495 Equus caballus ENSECAG00000009495 I
Gfo_R015012 Geospiza fortis Gfo_R015012 I
Gfo_R015011 Geospiza fortis Gfo_R015011 I
HSFY1 Homo sapiens ENSG00000172468 D
HSFY2 Homo sapiens ENSG00000169953 D
ENSSTOG00000025684 Ictidomys tridecemlineatus ENSSTOG00000025684 I
ENSLACG00000012431 Latimeria chalumnae ENSLACG00000012431 I
ENSLOCG00000014483 Lepisosteus oculatus ENSLOCG00000014483 I
ENSLAFG00000016976 Loxodonta africana ENSLAFG00000016976 I
ENSLAFG00000031072 Loxodonta africana ENSLAFG00000031072 I
ENSMEUG00000003908 Macropus eugenii ENSMEUG00000003908 I
ENSMGAG00000013753 Meleagris gallopavo ENSMGAG00000013753 I
ENSMODG00000027398 Monodelphis domestica ENSMODG00000027398 I
ENSMODG00000028107 Monodelphis domestica ENSMODG00000028107 I
Hsfy2 Mus musculus ENSMUSG00000045336 I
Myotis_brandtii_HSFY1_10020625 Myotis brandtii Myotis_brandtii_HSFY1_10020625 I
ENSMLUG00000028032 Myotis lucifugus ENSMLUG00000028032 I
ENSMLUG00000015387 Myotis lucifugus ENSMLUG00000015387 I
ENSMLUG00000022730 Myotis lucifugus ENSMLUG00000022730 I
ENSMLUG00000024907 Myotis lucifugus ENSMLUG00000024907 I
ENSMLUG00000025735 Myotis lucifugus ENSMLUG00000025735 N
ENSMLUG00000026997 Myotis lucifugus ENSMLUG00000026997 N
ENSMLUG00000030480 Myotis lucifugus ENSMLUG00000030480 I
Ogr08578 Ophisaurus gracilis Ogr08578 I
ENSOANG00000001091 Ornithorhynchus anatinus ENSOANG00000001091 I
ENSOANG00000028803 Ornithorhynchus anatinus ENSOANG00000028803 I
ENSOCUG00000025707 Oryctolagus cuniculus ENSOCUG00000025707 I
ENSOGAG00000026441 Otolemur garnettii ENSOGAG00000026441 I
ENSOARG00000003931 Ovis aries ENSOARG00000003931 N
ENSOARG00000003920 Ovis aries ENSOARG00000003920 I
ENSOARG00000002879 Ovis aries ENSOARG00000002879 I
ENSOARG00000002777 Ovis aries ENSOARG00000002777 N
ENSOARG00000001582 Ovis aries ENSOARG00000001582 N
ENSOARG00000009065 Ovis aries ENSOARG00000009065 N
ENSOARG00000009275 Ovis aries ENSOARG00000009275 N
Pvit_14501 Pogona vitticeps Pvit_14501 I
Hsfy2 Rattus norvegicus ENSRNOG00000038569 I
ENSSSCG00000012732 Sus scrofa ENSSSCG00000012732 I
ENSTGUG00000006065 Taeniopygia guttata ENSTGUG00000006065 I
ENSTGUG00000006066 Taeniopygia guttata ENSTGUG00000006066 I
ENSTNIG00000016643 Tetraodon nigroviridis ENSTNIG00000016643 N
ENSTNIG00000019520 Tetraodon nigroviridis ENSTNIG00000019520 N