Carubv10008876m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10008876m.g T142705_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.827 1.000
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10008876m C2H2 ZF 347 369
Carubv10008876m C2H2 ZF 368 399

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_115352 Agaricus bisporus AGABI2DRAFT_115352 N
M378DRAFT_7389 Amanita muscaria M378DRAFT_7389 N
CC1G_05197 Coprinopsis cinerea CC1G_05197 N
FIBRA_05018 Fibroporia radiculosa FIBRA_05018 N
FOMPIDRAFT_125143 Fomitopsis pinicola FOMPIDRAFT_125143 N
GLOTRDRAFT_120223 Gloeophyllum trabeum GLOTRDRAFT_120223 N
GYMLUDRAFT_40883 Gymnopus luxurians GYMLUDRAFT_40883 N
estExt_fgenesh2_pm.C_20470 Heterobasidion annosum estExt_fgenesh2_pm.C_20470 N
HETIRDRAFT_457419 Heterobasidion irregulare HETIRDRAFT_457419 N
JAAARDRAFT_124082 Jaapia argillacea JAAARDRAFT_124082 N
K443DRAFT_163922 Laccaria amethystina K443DRAFT_163922 N
LACBIDRAFT_325071 Laccaria bicolor LACBIDRAFT_325071 N
Moror_6620 Moniliophthora roreri Moror_6620 N
fgeneshMC_pg.2_#_712 Mucor circinelloides fgeneshMC_pg.2_#_712 N
estExt_fgeneshMC_pg.C_10750 Mucor circinelloides estExt_fgeneshMC_pg.C_10750 N
PAXRUDRAFT_821418 Paxillus rubicundulus PAXRUDRAFT_821418 N
PHACADRAFT_256665 Phanerochaete carnosa PHACADRAFT_256665 N
fgenesh1_pg.C_scaffold_1000689 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_1000689 N
PHLGIDRAFT_37209 Phlebiopsis gigantea PHLGIDRAFT_37209 N
fgeneshPB_pg.30__104 Phycomyces blakesleeanus fgeneshPB_pg.30__104 N
estExt_fgeneshPB_pg.C_90126 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_90126 N
estExt_fgeneshPB_pg.C_30269 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_30269 N
PILCRDRAFT_289090 Piloderma croceum PILCRDRAFT_289090 N
PIIN_06315 Piriformospora indica PIIN_06315 N
PISMIDRAFT_677699 Pisolithus microcarpus PISMIDRAFT_677699 N
M404DRAFT_122646 Pisolithus tinctorius M404DRAFT_122646 N
PLEOSDRAFT_172367 Pleurotus ostreatus PLEOSDRAFT_172367 N
PHSY_007120 Pseudozyma hubeiensis PHSY_007120 N
GLOINDRAFT_319860 Rhizophagus irregularis GLOINDRAFT_319860 N
RO3G_03663 Rhizopus oryzae RO3G_03663 N
RO3G_16326 Rhizopus oryzae RO3G_16326 N
SCLCIDRAFT_127645 Scleroderma citrinum SCLCIDRAFT_127645 N
M408DRAFT_271581 Serendipita vermifera M408DRAFT_271581 N
SERLA73DRAFT_94127 Serpula lacrymans SERLA73DRAFT_94127 N
CY34DRAFT_86381 Suillus luteus CY34DRAFT_86381 N
K437DRAFT_48877 Tilletiaria anomala K437DRAFT_48877 N