Carubv10018114m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10018114m.g T142732_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.822 0.935
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.822 0.935
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.772 0.783
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.766 0.717
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.762 0.717
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.762 0.717
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.761 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10018114m C2H2 ZF 49 71
Carubv10018114m C2H2 ZF 93 115

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

313 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_013080 Acremonium chrysogenum ACRE_013080 I
EURHEDRAFT_411156 Aspergillus ruber EURHEDRAFT_411156 I
M437DRAFT_18084 Aureobasidium melanogenum M437DRAFT_18084 I
COCC4DRAFT_40407 Bipolaris maydis COCC4DRAFT_40407 I
COCMIDRAFT_33369 Bipolaris oryzae COCMIDRAFT_33369 I
COCSADRAFT_97657 Bipolaris sorokiniana COCSADRAFT_97657 I
COCVIDRAFT_17332 Bipolaris victoriae COCVIDRAFT_17332 I
COCCADRAFT_6984 Bipolaris zeicola COCCADRAFT_6984 I
PGUG_05046 Candida guilliermondii PGUG_05046 N
CTHT_0032650 Chaetomium thermophilum CTHT_0032650 I
fgenesh1_kg.C_scaffold_5000057 Cochliobolus heterostrophus C5 fgenesh1_kg.C_scaffold_5000057 I
DEHA2E20614g Debaryomyces hansenii DEHA2E20614g N
LEMA_P075830.1 Leptosphaeria maculans LEMA_P075830.1 I
PGUG_05046 Meyerozyma guilliermondii PGUG_05046 N
Pc12g13890 Penicillium chrysogenum Pc12g13890 I
PDIP_77620 Penicillium digitatum PDIP_77620 I
PEX1_065040 Penicillium expansum PEX1_065040 I
PITC_048290 Penicillium italicum PITC_048290 I
PCH_Pc12g13890 Penicillium rubens PCH_Pc12g13890 I
U727_0043258041 Penicillium solitum U727_0043258041 I
SNOG_08036 Phaeosphaeria nodorum SNOG_08036 I
PTT_12277 Pyrenophora teres PTT_12277 I
PTRG_08316 Pyrenophora triticirepentis PTRG_08316 I
SETTUDRAFT_96438 Setosphaeria turcica SETTUDRAFT_96438 I
S40288_05306 Stachybotrys chartarum S40288_05306 I
S40285_06955 Stachybotrys chlorohalonata S40285_06955 I
SNOG_08036 Stagonospora nodorum SNOG_08036 I