Carubv10018142m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10018142m.g T142733_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.827 0.957
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.792 0.804
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.772 0.761
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.771 0.761
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.771 0.761
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.761 0.696
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.761 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10018142m C2H2 ZF 35 57
Carubv10018142m C2H2 ZF 83 105

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

368 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB00088.1 Alternaria brassicicola AB00088.1 N
CH063_03657 Colletotrichum higginsianum CH063_03657 N
PV10_08424 Exophiala mesophila PV10_08424 N
FFUJ_01581 Fusarium fujikuroi FFUJ_01581 N
FGRRES_01378 Fusarium graminearum FGRRES_01378 N
FPSE_11552 Fusarium pseudograminearum FPSE_11552 N
NechaG74381 Fusarium solani NechaG74381 N
fgenesh1_pg.sca_8_chr1_1_0000412 Nectria haematococca fgenesh1_pg.sca_8_chr1_1_0000412 N
F503_03119 Ophiostoma piceae uamh F503_03119 N
PFICI_13726 Pestalotiopsis fici PFICI_13726 N
PTT_13765 Pyrenophora teres PTT_13765 N
PTRG_10286 Pyrenophora triticirepentis PTRG_10286 N
SPBR_06366 Sporothrix brasiliensis SPBR_06366 N
HMPREF1624_07083 Sporothrix schenckii HMPREF1624_07083 N
SNOG_09876 Stagonospora nodorum SNOG_09876 N
VDBG_03963 Verticillium albo atrum VDBG_03963 N
VDBG_03963 Verticillium alfalfae VDBG_03963 N
VDAG_01189 Verticillium dahliae VDAG_01189 N