Ciclev10019959m.g (Citrus clementina)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Ciclev10019959m.g T142781_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
JKD
M06818_2.00 		Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAWWNDD		 Dap-seq
OMalley et al.(2016)
JKD_col_a 		0.827 0.953
IDD7
M06803_2.00 		Arabidopsis thaliana
NDDTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAHHN		 Dap-seq
OMalley et al.(2016)
IDD7_col_a 		0.797 0.930
IDD4
M06809_2.00 		Arabidopsis thaliana
WWTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAWW		 Dap-seq
OMalley et al.(2016)
IDD4_col_a 		0.797 0.907
MGP
M06795_2.00 		Arabidopsis thaliana
HNHDWTTTTGTCKTTTWNYD
HRNWAAAMGACAAAAWHDND		 Dap-seq
OMalley et al.(2016)
MGP_col_a 		0.797 0.907
MGP
M06796_2.00 		Arabidopsis thaliana
NNDTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAHNN		 Dap-seq
OMalley et al.(2016)
MGP_colamp_a 		0.797 0.907
IDD5
M06807_2.00 		Arabidopsis thaliana
DNTTTTGTCKTTTTSYD
HRSAAAAMGACAAAANH		 Dap-seq
OMalley et al.(2016)
IDD5_colamp_a 		0.792 0.930
IDD5
M06808_2.00 		Arabidopsis thaliana
WTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAW		 Dap-seq
OMalley et al.(2016)
IDD5_col 		0.792 0.930
AT1G14580
M06797_2.00 		Arabidopsis thaliana
NNNWWTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAWWNNN		 Dap-seq
OMalley et al.(2016)
At1g14580_col_a 		0.792 0.884
AT1G14580
M06798_2.00 		Arabidopsis thaliana
NNTTTTGTCKTTTWSYD
HRSWAAAMGACAAAANN		 Dap-seq
OMalley et al.(2016)
At1g14580_colamp_a 		0.792 0.884
NUC
M06822_2.00 		Arabidopsis thaliana
NNNNNTTTTGTCKTYTWBYD
HRVWARAMGACAAAANNNNN		 Dap-seq
OMalley et al.(2016)
NUC_col_a 		0.774 0.884
NUC
M06823_2.00 		Arabidopsis thaliana
NDTTTTGTCGTYTWNYD
HRNWARACGACAAAAHN		 Dap-seq
OMalley et al.(2016)
NUC_colamp_a 		0.774 0.884
IDD1
M06824_2.00 		Arabidopsis thaliana
DNTTTTGTCKTTTWBYD
HRVWAAAMGACAAAANH		 Dap-seq
OMalley et al.(2016)
At5g66730_colamp_a 		0.764 0.907
IDD1
M06825_2.00 		Arabidopsis thaliana
WDTTTTGTCKTTTWNYD
HRNWAAAMGACAAAAHW		 Dap-seq
OMalley et al.(2016)
At5g66730_col 		0.764 0.907
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10019959m C2H2 ZF 158 179
Ciclev10019959m C2H2 ZF 178 204

Links

Other C2H2 ZF family TFs
Other Citrus clementina TFs

641 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACLA_088930 Aspergillus clavatus CADACLAG00008857 N 0.000
CADANGAG00001928 Aspergillus niger CADANGAG00001928 N 0.000
M437DRAFT_47167 Aureobasidium melanogenum M437DRAFT_47167 N 0.000
BBA_07453 Beauveria bassiana BBA_07453 N 0.000
BBA_08510 Beauveria bassiana BBA_08510 N 0.000
CHGG_08269 Chaetomium globosum CHGG_08269 N 0.000
Z519_08085 Cladophialophora bantiana Z519_08085 N 0.000
G647_02958 Cladophialophora carrionii G647_02958 N 0.000
A1O5_05211 Cladophialophora psammophila A1O5_05211 N 0.000
CPUR_08234 Claviceps purpurea CPUR_08234 N 0.000
CH063_13215 Colletotrichum higginsianum CH063_13215 N 0.000
Cob_05129 Colletotrichum orbiculare Cob_05129 N 0.000
CSUB01_10231 Colletotrichum sublineola CSUB01_10231 N 0.000
W97_07560 Coniosporium apollinis W97_07560 N 0.000
CCM_04496 Cordyceps militaris CCM_04496 N 0.000
fgenesh1_pg.C_scaffold_9000410 Cryphonectria parasitica fgenesh1_pg.C_scaffold_9000410 N 0.000
HMPREF1541_00544 Cyphellophora europaea HMPREF1541_00544 N 0.000
A1O9_07021 Exophiala aquamarina A1O9_07021 N 0.000
HMPREF1120_04133 Exophiala dermatitidis HMPREF1120_04133 N 0.000
MBM_01548 Marssonina brunnea MBM_01548 N 0.000
MBM_08217 Marssonina brunnea MBM_08217 N 0.000
MBR_08937 Metarhizium brunneum MBR_08937 N 0.000
OIDMADRAFT_120194 Oidiodendron maius OIDMADRAFT_120194 N 0.000
OIDMADRAFT_121649 Oidiodendron maius OIDMADRAFT_121649 N 0.000
F503_02724 Ophiostoma piceae uamh F503_02724 N 0.000
PEX1_051210 Penicillium expansum PEX1_051210 N 0.000
U727_00430770701 Penicillium solitum U727_00430770701 N 0.000
PODANS_3_4320 Podospora anserina PODANS_3_4320 N 0.000
SBOR_5781 Sclerotinia borealis SBOR_5781 N 0.000
S40288_04224 Stachybotrys chartarum S40288_04224 N 0.000
S40285_05664 Stachybotrys chlorohalonata S40285_05664 N 0.000
TSTA_094290 Talaromyces stipitatus TSTA_094290 N 0.000
VHEMI08510 Torrubiella hemipterigena VHEMI08510 N 0.000
UREG_04141 Uncinocarpus reesii UREG_04141 N 0.000
VDBG_02757 Verticillium albo atrum VDBG_02757 N 0.000
VDBG_02757 Verticillium alfalfae VDBG_02757 N 0.000