gene28452-v1.0-hybrid (Fragaria vesca)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 gene28452-v1.0-hybrid T142980_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.795 0.783
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.795 0.783
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.795 0.761
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.777 0.848
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.766 0.783
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.761 0.739
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.761 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna28452.1-v1.0-hybrid C2H2 ZF 43 66
mrna28452.1-v1.0-hybrid C2H2 ZF 96 118

Links

Other C2H2 ZF family TFs
Other Fragaria vesca TFs

354 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
maker-pag1_scaffold_571-snap-gene-0.7 Pythium aphanidermatum maker-pag1_scaffold_571-snap-gene-0.7 N 0.000
maker-par_contig_6341-snap-gene-0.1 Pythium arrhenomanes maker-par_contig_6341-snap-gene-0.1 N 0.000
maker-par_contig_6510-snap-gene-0.1 Pythium arrhenomanes maker-par_contig_6510-snap-gene-0.1 N 0.000
maker-par_contig_926-fgenesh-gene-0.0 Pythium arrhenomanes maker-par_contig_926-fgenesh-gene-0.0 N 0.000
fgenesh-pir_contig_1013-abinit-gene-0.11 Pythium irregulare fgenesh-pir_contig_1013-abinit-gene-0.11 N 0.000
maker-pir_contig_1013-fgenesh-gene-0.0 Pythium irregulare maker-pir_contig_1013-fgenesh-gene-0.0 N 0.000
maker-piw_contig_1851-snap-gene-0.3 Pythium iwayamai maker-piw_contig_1851-snap-gene-0.3 N 0.000
PYU1_G008786 Pythium ultimum PYU1_G008786 N 0.000