Gorai.013G050100 (Gossypium raimondii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gorai.013G050100 T143084_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.822 0.935
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.803 0.935
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.799 0.717
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.799 0.696
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.796 0.870
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.796 0.870
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.796 0.870
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.787 0.804
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.787 0.804
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.776 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.013G050100.1 C2H2 ZF 95 117
Gorai.013G050100.1 C2H2 ZF 153 175

Links

Other C2H2 ZF family TFs
Other Gossypium raimondii TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
M437DRAFT_46847 Aureobasidium melanogenum M437DRAFT_46847 N 0.000
M437DRAFT_86792 Aureobasidium melanogenum M437DRAFT_86792 N 0.000
M438DRAFT_371368 Aureobasidium pullulans M438DRAFT_371368 N 0.000
AUEXF2481DRAFT_27061 Aureobasidium subglaciale AUEXF2481DRAFT_27061 N 0.000
A1O3_07332 Capronia epimyces A1O3_07332 N 0.000
CFIO01_12411 Colletotrichum fioriniae CFIO01_12411 N 0.000
CGGC5_9160 Colletotrichum gloeosporioides CGGC5_9160 N 0.000
NechaG82622 Fusarium solani NechaG82622 N 0.000
fgenesh1_pg.sca_9_chr7_10_0000146 Nectria haematococca fgenesh1_pg.sca_9_chr7_10_0000146 N 0.000
V499_02406 Pseudogymnoascus pannorum V499_02406 N 0.000