MDP0000170739 (Malus domestica)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 MDP0000170739 T143182_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.795 0.826
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.795 0.826
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.795 0.761
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.776 0.804
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.768 0.826
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.762 0.761
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.762 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000170739 C2H2 ZF 178 200
MDP0000170739 C2H2 ZF 229 251

Links

Other C2H2 ZF family TFs
Other Malus domestica TFs

370 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_062880 Acremonium chrysogenum ACRE_062880 I 0.000
AB03358.1 Alternaria brassicicola AB03358.1 N 0.000
COCC4DRAFT_21340 Bipolaris maydis COCC4DRAFT_21340 N 0.000
COCMIDRAFT_89716 Bipolaris oryzae COCMIDRAFT_89716 N 0.000
COCSADRAFT_92985 Bipolaris sorokiniana COCSADRAFT_92985 N 0.000
COCVIDRAFT_94504 Bipolaris victoriae COCVIDRAFT_94504 N 0.000
COCCADRAFT_1690 Bipolaris zeicola COCCADRAFT_1690 N 0.000
estExt_fgenesh1_pg.C_30275 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_30275 N 0.000
CGGC5_7534 Colletotrichum gloeosporioides CGGC5_7534 I 0.000
GLRG_01353 Colletotrichum graminicola GLRG_01353 I 0.000
CH063_11966 Colletotrichum higginsianum CH063_11966 I 0.000
Cob_12403 Colletotrichum orbiculare Cob_12403 I 0.000
CSUB01_03595 Colletotrichum sublineola CSUB01_03595 I 0.000
W97_01077 Coniosporium apollinis W97_01077 I 0.000
FGRRES_00515 Fusarium graminearum FGRRES_00515 I 0.000
FPSE_04421 Fusarium pseudograminearum FPSE_04421 I 0.000
CMQ_48 Grosmannia clavigera CMQ_48 I 0.000
MPH_00439 Macrophomina phaseolina MPH_00439 I 0.000
MAC_02987 Metarhizium acridum MAC_02987 I 0.000
MYCTH_2297012 Myceliophthora thermophila MYCTH_2297012 I 0.000
UCRNP2_4189 Neofusicoccum parvum UCRNP2_4189 I 0.000
PTRG_07536 Pyrenophora triticirepentis PTRG_07536 N 0.000
SETTUDRAFT_28486 Setosphaeria turcica SETTUDRAFT_28486 N 0.000
SNOG_04486 Stagonospora nodorum SNOG_04486 I 0.000
THITE_2112457 Thielavia terrestris THITE_2112457 I 0.000
UCRPA7_6727 Togninia minima UCRPA7_6727 I 0.000
TRIREDRAFT_73654 Trichoderma reesei TRIREDRAFT_73654 I 0.000
TRIVIDRAFT_212339 Trichoderma virens TRIVIDRAFT_212339 I 0.000
UV8b_4299 Ustilaginoidea virens UV8b_4299 I 0.000