orange1.1g037502m.g (Citrus sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 orange1.1g037502m.g T143278_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.811 0.976
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.811 0.976
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g037502m C2H2 ZF 134 155
orange1.1g037502m C2H2 ZF 155 180

Links

Other C2H2 ZF family TFs
Other Citrus sinensis TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA18G06040 Glycine max GLYMA18G06040 N 0.000
MTR_3g466980 Medicago truncatula MTR_3g466980 N 0.000