Pavir.Eb03660 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.Eb03660 T143349_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.780 0.761
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.779 0.761
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.779 0.761
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.769 0.696
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.769 0.696
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.759 0.674
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.757 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Eb03660.1.p C2H2 ZF 7 29
Pavir.Eb03660.1.p C2H2 ZF 59 81

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

401 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_052720 Acremonium chrysogenum ACRE_052720 I
AOL_s00215g441 Arthrobotrys oligospora AOL_s00215g441 I
ARB_03330 Arthroderma benhamiae ARB_03330 I
ACLA_016290 Aspergillus clavatus CADACLAG00001582 I
CADAFLAG00009131 Aspergillus flavus CADAFLAG00009131 I
AFUA_5G13310 Aspergillus fumigatus CADAFUAG00006042 I
ANIA_06889 Aspergillus nidulans CADANIAG00007690 I
CADANGAG00011408 Aspergillus niger CADANGAG00011408 I
CADAORAG00011593 Aspergillus oryzae CADAORAG00011593 I
ATEG_06183 Aspergillus terreus CADATEAG00001886 I
BBA_03744 Beauveria bassiana BBA_03744 I
COCC4DRAFT_172749 Bipolaris maydis COCC4DRAFT_172749 I
COCMIDRAFT_27930 Bipolaris oryzae COCMIDRAFT_27930 I
COCSADRAFT_141952 Bipolaris sorokiniana COCSADRAFT_141952 I
COCVIDRAFT_100340 Bipolaris victoriae COCVIDRAFT_100340 I
COCCADRAFT_109263 Bipolaris zeicola COCCADRAFT_109263 I
BDDG_03909 Blastomyces dermatitidis BDDG_03909 I
BGHDH14_bgh04346 Blumeria graminis BGHDH14_bgh04346 I
Bcin08g04710 Botrytis cinerea Bcin08g04710 I
PVAR5_1796 Byssochlamys spectabilis PVAR5_1796 I
CHGG_03119 Chaetomium globosum CHGG_03119 I
CTHT_0026520 Chaetomium thermophilum CTHT_0026520 I
CPUR_00998 Claviceps purpurea CPUR_00998 I
CIMG_09377 Coccidioides immitis CIMG_09377 I
CPC735_017550 Coccidioides posadasii CPC735_017550 I
estExt_fgenesh1_pg.C_180221 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_180221 I
CFIO01_07206 Colletotrichum fioriniae CFIO01_07206 I
GLRG_00439 Colletotrichum graminicola GLRG_00439 I
CH063_15177 Colletotrichum higginsianum CH063_15177 I
CH063_11861 Colletotrichum higginsianum CH063_11861 I
Cob_05363 Colletotrichum orbiculare Cob_05363 I
CSUB01_08637 Colletotrichum sublineola CSUB01_08637 I
W97_09318 Coniosporium apollinis W97_09318 I
CCM_09455 Cordyceps militaris CCM_09455 I
estExt_Genewise1Plus.C_12014 Cryphonectria parasitica estExt_Genewise1Plus.C_12014 I
H072_3292 Dactylellina haptotyla H072_3292 I
EPUS_05568 Endocarpon pusillum EPUS_05568 I
EV44_g2662 Erysiphe necator EV44_g2662 I
FFUJ_09555 Fusarium fujikuroi FFUJ_09555 I
FGRRES_04109 Fusarium graminearum FGRRES_04109 D
FOXG_11527 Fusarium oxysporum FOXG_11527 I
FPSE_00129 Fusarium pseudograminearum FPSE_00129 I
NechaG100921 Fusarium solani NechaG100921 I
FVEG_10296 Fusarium verticillioides FVEG_10296 I
GGTG_01006 Gaeumannomyces graminis GGTG_01006 I
CMQ_3221 Grosmannia clavigera CMQ_3221 I
HCBG_01563 Histoplasma capsulatum HCBG_01563 I
LEMA_P107540.1 Leptosphaeria maculans LEMA_P107540.1 I
MGG_15139 Magnaporthe oryzae MGG_15139 I
MBM_01117 Marssonina brunnea MBM_01117 I
MAC_01643 Metarhizium acridum MAC_01643 I
MAM_00184 Metarhizium album MAM_00184 I
MANI_117820 Metarhizium anisopliae MANI_117820 I
MBR_02809 Metarhizium brunneum MBR_02809 I
MGU_00202 Metarhizium guizhouense MGU_00202 I
MAJ_02389 Metarhizium majus MAJ_02389 I
X797_000863 Metarhizium robertsii X797_000863 I
MCYG_03949 Microsporum canis MCYG_03949 I
MGYG_07702 Microsporum gypseum MGYG_07702 I
estExt_fgenesh1_pg.C_sca_20_chr6_4_00369 Nectria haematococca estExt_fgenesh1_pg.C_sca_20_chr6_4_00369 I
UCRNP2_8934 Neofusicoccum parvum UCRNP2_8934 I
NFIA_073730 Neosartorya fischeri CADNFIAG00007209 I
NCU00445 Neurospora crassa NCU00445 D
estExt_fgenesh2_pg.C_50201 Neurospora discreta estExt_fgenesh2_pg.C_50201 I
NEUTE1DRAFT_146594 Neurospora tetrasperma NEUTE1DRAFT_146594 I
OIDMADRAFT_157493 Oidiodendron maius OIDMADRAFT_157493 I
F503_04589 Ophiostoma piceae uamh F503_04589 I
PAAG_05555 Paracoccidioides sp lutzii PAAG_05555 I
Pc21g03530 Penicillium chrysogenum Pc21g03530 I
PMAA_034090 Penicillium marneffei PMAA_034090 I
PDE_07343 Penicillium oxalicum PDE_07343 I
PCH_Pc21g03530 Penicillium rubens PCH_Pc21g03530 I
U727_0043014751 Penicillium solitum U727_0043014751 I
PFICI_12447 Pestalotiopsis fici PFICI_12447 I
PODANS_7_6620 Podospora anserina PODANS_7_6620 I
PTT_20177 Pyrenophora teres PTT_20177 I
PTRG_05544 Pyrenophora triticirepentis PTRG_05544 I
SAPIO_CDS2099 Scedosporium apiospermum SAPIO_CDS2099 I
SBOR_3221 Sclerotinia borealis SBOR_3221 I
SMAC_01881 Sordaria macrospora SMAC_01881 I
SPBR_05123 Sporothrix brasiliensis SPBR_05123 I
HMPREF1624_04820 Sporothrix schenckii HMPREF1624_04820 I
S40288_04720 Stachybotrys chartarum S40288_04720 I
S40285_07798 Stachybotrys chlorohalonata S40285_07798 I
PMAA_034090 Talaromyces marneffei PMAA_034090 I
TSTA_063500 Talaromyces stipitatus TSTA_063500 I
THITE_2118415 Thielavia terrestris THITE_2118415 I
UCRPA7_8320 Togninia minima UCRPA7_8320 I
VHEMI07768 Torrubiella hemipterigena VHEMI07768 I
TRIATDRAFT_291718 Trichoderma atroviride TRIATDRAFT_291718 I
TRIREDRAFT_59067 Trichoderma reesei TRIREDRAFT_59067 I
TRIVIDRAFT_10694 Trichoderma virens TRIVIDRAFT_10694 I
TEQG_03363 Trichophyton equinum TEQG_03363 I
H101_07533 Trichophyton interdigitale H101_07533 I
TESG_04869 Trichophyton tonsurans TESG_04869 I
UREG_04936 Uncinocarpus reesii UREG_04936 I
UV8b_2527 Ustilaginoidea virens UV8b_2527 I
VDBG_07828 Verticillium albo atrum VDBG_07828 I
VDBG_07828 Verticillium alfalfae VDBG_07828 I
VDAG_09694 Verticillium dahliae VDAG_09694 I