Pavir.J00894 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.J00894 T143397_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.786 0.761
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.786 0.761
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.785 0.717
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.761 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J00894.1.p C2H2 ZF 58 85
Pavir.J00894.1.p C2H2 ZF 117 139

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

368 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_028580 Acremonium chrysogenum ACRE_028580 N
AB00088.1 Alternaria brassicicola AB00088.1 N
COCC4DRAFT_87358 Bipolaris maydis COCC4DRAFT_87358 N
COCMIDRAFT_81530 Bipolaris oryzae COCMIDRAFT_81530 N
COCSADRAFT_105936 Bipolaris sorokiniana COCSADRAFT_105936 N
COCVIDRAFT_32721 Bipolaris victoriae COCVIDRAFT_32721 N
COCCADRAFT_90976 Bipolaris zeicola COCCADRAFT_90976 N
gw1.2.32.1 Cochliobolus heterostrophus C5 gw1.2.32.1 N
CH063_03657 Colletotrichum higginsianum CH063_03657 N
FFUJ_01581 Fusarium fujikuroi FFUJ_01581 N
FGRRES_01378 Fusarium graminearum FGRRES_01378 N
FPSE_11552 Fusarium pseudograminearum FPSE_11552 N
NechaG74381 Fusarium solani NechaG74381 N
fgenesh1_pg.sca_8_chr1_1_0000412 Nectria haematococca fgenesh1_pg.sca_8_chr1_1_0000412 N
UCRNP2_4782 Neofusicoccum parvum UCRNP2_4782 N
OIDMADRAFT_74239 Oidiodendron maius OIDMADRAFT_74239 N
F503_03119 Ophiostoma piceae uamh F503_03119 N
PFICI_13726 Pestalotiopsis fici PFICI_13726 N
PODANS_5_4070 Podospora anserina PODANS_5_4070 N
MYCFIDRAFT_158158 Pseudocercospora fijiensis MYCFIDRAFT_158158 N
PTT_13765 Pyrenophora teres PTT_13765 N
PTRG_10286 Pyrenophora triticirepentis PTRG_10286 N
SETTUDRAFT_87447 Setosphaeria turcica SETTUDRAFT_87447 N
SMAC_07447 Sordaria macrospora SMAC_07447 N
SPBR_06366 Sporothrix brasiliensis SPBR_06366 N
HMPREF1624_07083 Sporothrix schenckii HMPREF1624_07083 N
SNOG_09876 Stagonospora nodorum SNOG_09876 N
PV09_00164 Verruconis gallopava PV09_00164 N
VDBG_03963 Verticillium albo atrum VDBG_03963 N
VDBG_03963 Verticillium alfalfae VDBG_03963 N
VDAG_01189 Verticillium dahliae VDAG_01189 N