Scas_Contig649.29 (Saccharomyces castellii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Scas_Contig649.29 T144957_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MSN4
M00032_2.00 		Saccharomyces cerevisiae
NYCCCYNN
NNRGGGRN		 PBM
Badis et al.(2008)
MSN4_2121 		0.816 0.935
MSN4
M07462_2.00 		Saccharomyces cerevisiae
CCCCT
AGGGG		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0342.1 		0.816 0.935
MSN4
M08533_2.00 		Saccharomyces cerevisiae
CCCCT
AGGGG		 Misc
DeBoer et al.(2011)
YKL062W_518 		0.816 0.935
KLLA0_F26961g
M01039_2.00 		Kluyveromyces lactis
CYCCYTD
HARGGRG		 PBM
Siggers et al.(2014)
KLLA0F29691gKlac 		0.787 0.826
MSN2
M00036_2.00 		Saccharomyces cerevisiae
NVCCCCTK
MAGGGGBN		 PBM
Badis et al.(2008)
MSN2_2101 		0.781 0.761
MSN2
M07466_2.00 		Saccharomyces cerevisiae
CCCCY
RGGGG		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0341.1 		0.781 0.761
MSN2
M08538_2.00 		Saccharomyces cerevisiae
NHYCCKN
NMGGRDN		 Misc
DeBoer et al.(2011)
YMR037C_1380 		0.781 0.761
MSN2
M10399_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MSN2_Q4 		0.781 0.761
CAGL0M13189g
M01034_2.00 		Candida glabrata
MYCCBBDNN
NNHVVGGRK		 PBM
Siggers et al.(2014)
CAGL0M13189gCgla 		0.768 0.870
CaO19.4752
M01035_2.00 		Candida albicans
VCCCCYDNNN
NNNHRGGGGB		 PBM
Siggers et al.(2014)
Msn4_orf19.4752Calb 		0.767 0.804
CAGL0F05995g
M01032_2.00 		Candida glabrata
NYCCYYNN
NNRRGGRN		 PBM
Siggers et al.(2014)
CAGL0F05995gCgla 		0.757 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Scas_Contig649.29 C2H2 ZF 673 696
Scas_Contig649.29 C2H2 ZF 702 724

Links

Other C2H2 ZF family TFs
Other Saccharomyces castellii TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_00940 Aegilops tauschii F775_00940 N
BRADI2G11260 Brachypodium distachyon BRADI2G11260 N
MLOC_71056 Hordeum vulgare MLOC_71056 N
LPERR01G11210 Leersia perrieri LPERR01G11210 N
OB01G22030 Oryza brachyantha OB01G22030 N
ORGLA01G0103700 Oryza glaberrima ORGLA01G0103700 N
OGLUM01G13750 Oryza glumaepatula OGLUM01G13750 N
ONIVA01G14500 Oryza nivara ONIVA01G14500 N
OPUNC01G11990 Oryza punctata OPUNC01G11990 N
ORUFI01G13250 Oryza rufipogon ORUFI01G13250 N
TIP2 Oryza sativa OS01G0293100 N
Pavir.Ea01473 Panicum virgatum Pavir.Ea01473 N
Pavir.Eb01270 Panicum virgatum Pavir.Eb01270 N
Sb03g011940 Sorghum bicolor Sb03g011940 N
Traes_7DS_B8013B22B Triticum aestivum Traes_7DS_B8013B22B N
TRIUR3_32308 Triticum urartu TRIUR3_32308 N
GRMZM2G021276 Zea mays GRMZM2G021276 N