SMU15013927 (Schmidtea mediterranea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 SMU15013927 T145119_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.780 0.796
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.780 0.796
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.780 0.796
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.780 0.796
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.765 0.796
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.765 0.796
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.765 0.796
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.763 0.779
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.763 0.779
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.763 0.779
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.763 0.779
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.757 0.770
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.757 0.770
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.757 0.770
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMU15013927 C2H2 ZF 231 253
SMU15013927 C2H2 ZF 263 284
SMU15013927 C2H2 ZF 288 310
SMU15013927 C2H2 ZF 316 338
SMU15013927 C2H2 ZF 344 365

Links

Other C2H2 ZF family TFs
Other Schmidtea mediterranea TFs

199 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_008_00101 Aquilegia coerulea Aquca_008_00101 N 0.000
FRS11 Arabidopsis thaliana AT1G10240 N 0.000
Bostr.13671s0465 Boechera stricta Bostr.13671s0465 N 0.000
BRADI5G11330 Brachypodium distachyon BRADI5G11330 N 0.000
Bo5g010680 Brassica oleracea Bo5g010680 N 0.000
PK06148.1 Cannabis sativa PK06148.1 N 0.000
Cagra.4395s0212 Capsella grandiflora Cagra.4395s0212 N 0.000
Carubv10012599m.g Capsella rubella Carubv10012599m.g N 0.000
evm.TU.supercontig_113.2 Carica papaya evm.TU.supercontig_113.2 N 0.000
Ciclev10000456m.g Citrus clementina Ciclev10000456m.g N 0.000
orange1.1g047253m.g Citrus sinensis orange1.1g047253m.g N 0.000
Cucsa.019230 Cucumis sativus Cucsa.019230 N 0.000
Eucgr.G00085 Eucalyptus grandis Eucgr.G00085 N 0.000
Thhalv10006984m.g Eutrema salsugineum Thhalv10006984m.g N 0.000
gene29088-v1.0-hybrid Fragaria vesca gene29088-v1.0-hybrid N 0.000
GLYMA10G00380 Glycine max GLYMA10G00380 N 0.000
Gorai.006G118900 Gossypium raimondii Gorai.006G118900 N 0.000
MLOC_15705 Hordeum vulgare MLOC_15705 N 0.000
MDP0000234814 Malus domestica MDP0000234814 N 0.000
cassava25471.m1 Manihot esculenta cassava25471.m1 N 0.000
OB04G20960 Oryza brachyantha OB04G20960 N 0.000
BGIOSGA012540 Oryza indica BGIOSGA012540 N 0.000
OS04G0443000 Oryza sativa OS04G0443000 N 0.000
PDK_20s1756181g001 Phoenix dactylifera PDK_20s1756181g001 N 0.000
POPTR_0004s23620 Populus trichocarpa POPTR_0004s23620 N 0.000
Pm003854 Prunus mume Pm003854 N 0.000
PRUPE_ppa002379mg Prunus persica PRUPE_ppa002379mg N 0.000
29685.m000503 Ricinus communis 29685.m000503 N 0.000
SapurV1A.0225s0240 Salix purpurea SapurV1A.0225s0240 N 0.000
Si012297m.g Setaria italica Si012297m.g N 0.000
Solyc01g103180.2 Solanum lycopersicum Solyc01g103180.2 N 0.000
Sb06g017580 Sorghum bicolor Sb06g017580 N 0.000
TCM_041141 Theobroma cacao TCM_041141 N 0.000
Traes_2BL_C1DE13045 Triticum aestivum Traes_2BL_C1DE13045 N 0.000
Traes_2AL_9A4A7514E Triticum aestivum Traes_2AL_9A4A7514E N 0.000
TRIUR3_11057 Triticum urartu TRIUR3_11057 N 0.000
VIT_12s0035g01360 Vitis vinifera VIT_12s0035g01360 N 0.000