snai3 (Xenopus tropicalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XB-GENE-488030 T145434_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI1
M04441_2.00 		Homo sapiens
NVCACCTGYN
NRCAGGTGBN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX 		0.775 0.844
SNAI1
M04443_2.00 		Homo sapiens
TRCACCTGYN
NRCAGGTGYA		 SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX 		0.775 0.844
SNAI1
M08303_2.00 		Homo sapiens
NNNNGCACCTGCYNB
VNRGCAGGTGCNNNN		 ChIP-seq
Schmitges et al.(2016)
O95863.MEME 		0.775 0.844
SNAI1
M08886_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C 		0.775 0.844
SNAI1
M10201_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q4 		0.775 0.844
SNAI1
M10202_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q6 		0.775 0.844
SNAI1
M04442_2.00 		Homo sapiens
NRCACCTGYN
NRCAGGTGYN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX 		0.775 0.844
SNAI1
M04444_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX 		0.775 0.844
Snai1
M00781_2.00 		Mus musculus
NNNTGTCANN
NNTGACANNN		 PBM
Weirauch et al.(2013)
pTH2340 		0.772 0.844
Snai1
M09002_2.00 		Mus musculus
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C 		0.772 0.844
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI60807 C2H2 ZF 147 169
AAI60807 C2H2 ZF 173 195
AAI60807 C2H2 ZF 201 223
AAI60807 C2H2 ZF 229 249

Links

Other C2H2 ZF family TFs
Other Xenopus tropicalis TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF398 Bos taurus ENSBTAG00000020445 I
ZNF398 Callithrix jacchus ENSCJAG00000010213 I
ZNF398 Canis familiaris ENSCAFG00000004429 I
ENSCSAG00000007015 Chlorocebus sabaeus ENSCSAG00000007015 I
ZNF398 Choloepus hoffmanni ENSCHOG00000007407 I
ZNF398 Dasypus novemcinctus ENSDNOG00000038814 I
ZNF398 Gorilla gorilla ENSGGOG00000005812 I
ZNF398 Homo sapiens ENSG00000197024 D
ENSSTOG00000013384 Ictidomys tridecemlineatus ENSSTOG00000013384 I
ENSP00000338984 Macaca fascicularis ENSP00000338984 I
ENSMICG00000016618 Microcebus murinus ENSMICG00000016618 I
ENSMPUG00000006622 Mustela putorius furo ENSMPUG00000006622 I
Zfp398 Mus musculus ENSMUSG00000062519 I
Myotis_brandtii_ZNF398_10025637 Myotis brandtii Myotis_brandtii_ZNF398_10025637 I
ZNF398 Myotis lucifugus ENSMLUG00000007451 I
ENSNLEG00000003700 Nomascus leucogenys ENSNLEG00000003700 I
ZNF398 Ochotona princeps ENSOPRG00000010531 I
ZNF398 Oryctolagus cuniculus ENSOCUG00000008416 I
ZNF398 Otolemur garnettii ENSOGAG00000016740 I
ZNF398 Pan troglodytes ENSPTRG00000023917 I
ENSPANG00000015944 Papio anubis ENSPANG00000015944 I
ENSPPYG00000018150 Pongo abelii ENSPPYG00000018150 I
ENSTSYG00000002784 Tarsius syrichta ENSTSYG00000002784 I