13440_YKL062W (Saccharomyces mikatae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 13440_YKL062W T145918_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MSN4
M00032_2.00 		Saccharomyces cerevisiae
NYCCCYNN
NNRGGGRN		 PBM
Badis et al.(2008)
MSN4_2121 		0.827 1.000
MSN4
M07462_2.00 		Saccharomyces cerevisiae
CCCCT
AGGGG		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0342.1 		0.827 1.000
MSN4
M08533_2.00 		Saccharomyces cerevisiae
CCCCT
AGGGG		 Misc
DeBoer et al.(2011)
YKL062W_518 		0.827 1.000
KLLA0_F26961g
M01039_2.00 		Kluyveromyces lactis
CYCCYTD
HARGGRG		 PBM
Siggers et al.(2014)
KLLA0F29691gKlac 		0.787 0.826
MSN2
M00036_2.00 		Saccharomyces cerevisiae
NVCCCCTK
MAGGGGBN		 PBM
Badis et al.(2008)
MSN2_2101 		0.781 0.761
MSN2
M07466_2.00 		Saccharomyces cerevisiae
CCCCY
RGGGG		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0341.1 		0.781 0.761
MSN2
M08538_2.00 		Saccharomyces cerevisiae
NHYCCKN
NMGGRDN		 Misc
DeBoer et al.(2011)
YMR037C_1380 		0.781 0.761
MSN2
M10399_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MSN2_Q4 		0.781 0.761
CAGL0M13189g
M01034_2.00 		Candida glabrata
MYCCBBDNN
NNHVVGGRK		 PBM
Siggers et al.(2014)
CAGL0M13189gCgla 		0.774 0.891
CaO19.4752
M01035_2.00 		Candida albicans
VCCCCYDNNN
NNNHRGGGGB		 PBM
Siggers et al.(2014)
Msn4_orf19.4752Calb 		0.761 0.783
CAGL0F05995g
M01032_2.00 		Candida glabrata
NYCCYYNN
NNRRGGRN		 PBM
Siggers et al.(2014)
CAGL0F05995gCgla 		0.757 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
13440_YKL062W C2H2 ZF 584 607
13440_YKL062W C2H2 ZF 613 635

Links

Other C2H2 ZF family TFs
Other Saccharomyces mikatae TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK07396.1 Cannabis sativa PK07396.1 N 0.000
MLOC_70503 Hordeum vulgare MLOC_70503 N 0.000
OB0245G10010 Oryza brachyantha OB0245G10010 N 0.000
OGLUM02G07340 Oryza glumaepatula OGLUM02G07340 N 0.000
OGLUM05G19360 Oryza glumaepatula OGLUM05G19360 N 0.000
BGIOSGA006953 Oryza indica BGIOSGA006953 N 0.000
BGIOSGA019943 Oryza indica BGIOSGA019943 N 0.000
OMERI05G15970 Oryza meridionalis OMERI05G15970 N 0.000
ONIVA02G08940 Oryza nivara ONIVA02G08940 N 0.000
ONIVA05G19190 Oryza nivara ONIVA05G19190 N 0.000
OPUNC02G06490 Oryza punctata OPUNC02G06490 N 0.000
OPUNC05G16080 Oryza punctata OPUNC05G16080 N 0.000
Solyc06g074360.2 Solanum lycopersicum Solyc06g074360.2 N 0.000
PGSC0003DMG400030271 Solanum tuberosum PGSC0003DMG400030271 N 0.000
Traes_7AS_9671D35EF Triticum aestivum Traes_7AS_9671D35EF N 0.000
TRIUR3_33088 Triticum urartu TRIUR3_33088 N 0.000