CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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L898_g5287
(
Steinernema monticolum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
L898_g5287
T154815_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
klu
M03680_2.00
Drosophila melanogaster
HCCRCCCACGCAH
DTGCGTGGGYGGD
SELEX
Nitta et al.(2015)
klu_1
0.777
0.815
klu
M03681_2.00
Drosophila melanogaster
YMCGCCCMCGCAH
DTGCGKGGGCGKR
SELEX
Nitta et al.(2015)
klu_2
0.777
0.815
klu
M06114_2.00
Drosophila melanogaster
MCACCCMCRCA
TGYGKGGGTGK
B1H
Zhu et al.(2011)
klu_SANGER_10_FBgn0013469
0.777
0.815
klu
M06115_2.00
Drosophila melanogaster
NNNNMCACCCMCRCN
NGYGKGGGTGKNNNN
B1H
Zhu et al.(2011)
klu_SOLEXA_5_FBgn0013469
0.777
0.815
klu-1
M00637_2.00
Caenorhabditis elegans
CDCCCMCV
BGKGGGHG
PBM
Narasimhan et al.(2015)
pTH9355
0.761
0.815
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
L898_g5287.t1
C2H2 ZF
137
160
YVCQHCGQAFALHDRLAKHIASRH
L898_g5287.t1
C2H2 ZF
178
200
HKCTVCKKSFGRSDMLTRHMRLH
L898_g5287.t1
C2H2 ZF
206
228
YGCQICGQVFSRSDHLSTHQRTH
L898_g5287.t1
C2H2 ZF
234
256
YQCPQCNYAASRRDMITRHMRTH
Links
Other
C2H2 ZF
family TFs
Other
Steinernema monticolum
TFs
59 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy