nLs.2.1.2.g09168 (Litomosoides sigmodontis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 nLs.2.1.2.g09168 T155362_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Blimp-1
M03692_2.00 		Drosophila melanogaster
NNYACTTTCVYYN
NRRBGAAAGTRNN		 SELEX
Nitta et al.(2015)
Blimp-1_1 		0.764 0.833
Blimp-1
M06141_2.00 		Drosophila melanogaster
ACTTTCACTTTY
RAAAGTGAAAGT		 B1H
Zhu et al.(2011)
Blimp-1_NAR_FBgn0035625 		0.764 0.833
Blimp-1
M06142_2.00 		Drosophila melanogaster
RCTTTCMCTTTY
RAAAGKGAAAGY		 B1H
Zhu et al.(2011)
Blimp-1_SANGER_5_FBgn0035625 		0.764 0.833
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nLs.2.1.2.t09168-RA C2H2 ZF 249 271
nLs.2.1.2.t09168-RA C2H2 ZF 277 299
nLs.2.1.2.t09168-RA C2H2 ZF 305 327
nLs.2.1.2.t09168-RA C2H2 ZF 333 355
nLs.2.1.2.t09168-RA C2H2 ZF 361 382

Links

Other C2H2 ZF family TFs
Other Litomosoides sigmodontis TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SMU15035429 Schmidtea mediterranea SMU15035429 N