nRc.2.0.1.g22468 (Romanomermis culicivorax)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 nRc.2.0.1.g22468 T155478_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
opa
M03668_2.00 		Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV		 SELEX
Nitta et al.(2015)
opa_1 		0.801 0.879
opa
M05861_2.00 		Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB		 SMiLE-seq
Isakova et al.(2017)
Opa 		0.801 0.879
opa
M06468_2.00 		Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC		 B1H
Mathelier et al.(2014)
MA0456.1 		0.801 0.879
opa
M06062_2.00 		Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC		 B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002 		0.801 0.879
opa
M06063_2.00 		Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK		 B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002 		0.801 0.879
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nRc.2.0.1.t22468-RA C2H2 ZF 257 284
nRc.2.0.1.t22468-RA C2H2 ZF 290 314
nRc.2.0.1.t22468-RA C2H2 ZF 320 344
nRc.2.0.1.t22468-RA C2H2 ZF 350 373

Links

Other C2H2 ZF family TFs
Other Romanomermis culicivorax TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000015039 Ailuropoda melanoleuca ENSAMEG00000015039 N
ENSP00000312141-D1 Bos grunniens ENSP00000312141-D1 N
ENSBTAG00000023675 Bos taurus ENSBTAG00000023675 N
ENSCJAG00000008799 Callithrix jacchus ENSCJAG00000008799 N
ENSCAFG00000024833 Canis familiaris ENSCAFG00000024833 N
ENSCPOG00000013512 Cavia porcellus ENSCPOG00000013512 N
ENSCSAG00000005929 Chlorocebus sabaeus ENSCSAG00000005929 N
ENSCHOG00000006889 Choloepus hoffmanni ENSCHOG00000006889 N
Zfp654 Dipodomys ordii ENSDORG00000010609 N
ENSECAG00000005293 Equus caballus ENSECAG00000005293 N
ENSFCAG00000029279 Felis catus ENSFCAG00000029279 N
ZNF654 Gorilla gorilla ENSGGOG00000000500 N
ZNF654 Homo sapiens ENSG00000175105 N
ENSSTOG00000024555 Ictidomys tridecemlineatus ENSSTOG00000024555 N
ENSP00000312141 Macaca fascicularis ENSP00000312141 N
Zfp654 Mus musculus ENSMUSG00000047141 N
Myotis_brandtii_ZNF654_10027122 Myotis brandtii Myotis_brandtii_ZNF654_10027122 N
ENSMLUG00000027029 Myotis lucifugus ENSMLUG00000027029 N
ENSOGAG00000029395 Otolemur garnettii ENSOGAG00000029395 N
ENSOARG00000017077 Ovis aries ENSOARG00000017077 N
ENSPTRG00000030181 Pan troglodytes ENSPTRG00000030181 N
ENSPANG00000017486 Papio anubis ENSPANG00000017486 N
ENSPPYG00000013643 Pongo abelii ENSPPYG00000013643 N
Zfp654 Rattus norvegicus ENSRNOG00000029956 N
ENSVPAG00000002882 Vicugna pacos ENSVPAG00000002882 N