PXEA_0002510801 (Protopolystoma xenopodis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 PXEA_0002510801 T155835_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.775 0.860
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.775 0.860
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.775 0.860
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.775 0.860
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.775 0.807
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.775 0.807
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.775 0.807
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.775 0.807
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.757 0.833
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.757 0.833
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.757 0.833
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PXEA_0002510801-mRNA-1 C2H2 ZF 449 471
PXEA_0002510801-mRNA-1 C2H2 ZF 480 502
PXEA_0002510801-mRNA-1 C2H2 ZF 506 528
PXEA_0002510801-mRNA-1 C2H2 ZF 534 556
PXEA_0002510801-mRNA-1 C2H2 ZF 562 583

Links

Other C2H2 ZF family TFs
Other Protopolystoma xenopodis TFs

180 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000006227 Ailuropoda melanoleuca ENSAMEG00000006227 I 0.000
ENSBTAP00000000066-D1 Bos grunniens ENSBTAP00000000066-D1 I 0.000
PRDM14 Bos taurus ENSBTAG00000000060 I 0.000
PRDM14 Callithrix jacchus ENSCJAG00000008052 I 0.000
PRDM14 Canis familiaris ENSCAFG00000007696 I 0.000
PRDM14 Cavia porcellus ENSCPOG00000027176 I 0.000
ENSCSAG00000013856 Chlorocebus sabaeus ENSCSAG00000013856 I 0.000
ENSDNOG00000014500 Dasypus novemcinctus ENSDNOG00000014500 I 0.000
PRDM14 Equus caballus ENSECAG00000014777 I 0.000
ENSFCAG00000001436 Felis catus ENSFCAG00000001436 I 0.000
PRDM14 Homo sapiens ENSG00000147596 D 0.000
ENSP00000276594 Macaca fascicularis ENSP00000276594 I 0.000
ENSMMUG00000014191 Macaca mulatta ENSMMUG00000014191 I 0.000
ENSMPUG00000010629 Mustela putorius furo ENSMPUG00000010629 I 0.000
ENSOARG00000003528 Ovis aries ENSOARG00000003528 I 0.000
PRDM14 Pan troglodytes ENSPTRG00000020331 I 0.000
ENSPANG00000024378 Papio anubis ENSPANG00000024378 I 0.000
ENSPPYG00000018658 Pongo abelii ENSPPYG00000018658 I 0.000
ENSTSYG00000010610 Tarsius syrichta ENSTSYG00000010610 I 0.000