Carubv10012963m.g (Capsella rubella)
CG-1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03859 (CG-1) IPR005559 Carubv10012963m.g T163504_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CAMTA5
M06827_2.00 		Arabidopsis thaliana
NVGYGTNNDHNVCGYGTN
NACRCGBNDHNNACRCBN		 Dap-seq
OMalley et al.(2016)
CAMTA5_col_a 		0.860 0.860
Q2WEL1_ORYSA
M10406_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBT_01 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10012963m CG-1 31 145

Links

Other CG-1 family TFs
Other Capsella rubella TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00057p00042800 Amborella trichopoda AMTR_s00057p00042800 I 0.746
Aquca_003_00568 Aquilegia coerulea Aquca_003_00568 I 0.833
fgenesh1_pg.C_scaffold_7002321 Arabidopsis lyrata fgenesh1_pg.C_scaffold_7002321 I 0.860
fgenesh1_pm.C_scaffold_3001474 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3001474 I 0.956
AT3G16940 Arabidopsis thaliana AT3G16940 I 0.974
CAMTA5 Arabidopsis thaliana AT4G16150 D 0.860
Bostr.19424s0974 Boechera stricta Bostr.19424s0974 I 0.991
Bostr.30275s0060 Boechera stricta Bostr.30275s0060 I 0.833
Bo5g123580 Brassica oleracea Bo5g123580 I 0.947
Bo8g043280 Brassica oleracea Bo8g043280 I 0.851
Bra022188 Brassica rapa Bra022188 I 0.947
Bra038040 Brassica rapa Bra038040 I 0.842
PK20811.1 Cannabis sativa PK20811.1 I 0.825
Cagra.0053s0009 Capsella grandiflora Cagra.0053s0009 I 0.851
Cagra.4396s0001 Capsella grandiflora Cagra.4396s0001 I 0.991
Carubv10004090m.g Capsella rubella Carubv10004090m.g I 0.851
evm.TU.supercontig_929.1 Carica papaya evm.TU.supercontig_929.1 I 0.842
Ca_02997 Cicer arietinum Ca_02997 I 0.833
Cla009415 Citrullus lanatus Cla009415 I 0.860
Ciclev10004273m.g Citrus clementina Ciclev10004273m.g I 0.877
orange1.1g002476m.g Citrus sinensis orange1.1g002476m.g I 0.877
Cucsa.325250 Cucumis sativus Cucsa.325250 I 0.860
Eucgr.H04035 Eucalyptus grandis Eucgr.H04035 I 0.868
Thhalv10024342m.g Eutrema salsugineum Thhalv10024342m.g I 0.860
Thhalv10020047m.g Eutrema salsugineum Thhalv10020047m.g I 0.965
gene10891-v1.0-hybrid Fragaria vesca gene10891-v1.0-hybrid I 0.833
GLYMA07G37090 Glycine max GLYMA07G37090 I 0.860
GLYMA17G03510 Glycine max GLYMA17G03510 I 0.851
GLYMA15G15350 Glycine max GLYMA15G15350 I 0.877
GLYMA09G04310 Glycine max GLYMA09G04310 I 0.877
Gorai.004G075100 Gossypium raimondii Gorai.004G075100 I 0.798
Gorai.005G065700 Gossypium raimondii Gorai.005G065700 I 0.816
Gorai.006G079000 Gossypium raimondii Gorai.006G079000 I 0.851
Gorai.011G198600 Gossypium raimondii Gorai.011G198600 I 0.886
Lus10036455.g Linum usitatissimum Lus10036455.g I 0.781
Lus10037738.g Linum usitatissimum Lus10037738.g I 0.851
Lus10041126.g Linum usitatissimum Lus10041126.g I 0.772
chr4.CM0429.140.nd Lotus japonicus chr4.CM0429.140.nd I 0.851
MDP0000233860 Malus domestica MDP0000233860 I 0.877
MDP0000167705 Malus domestica MDP0000167705 I 0.877
MDP0000164873 Malus domestica MDP0000164873 I 0.877
cassava40488.m1 Manihot esculenta cassava40488.m1 I 0.860
MTR_4g121840 Medicago truncatula MTR_4g121840 I 0.851
MTR_2g034650 Medicago truncatula MTR_2g034650 I 0.851
mgf013655m Mimulus guttatus mgf013655m I 0.781
mgf012030m Mimulus guttatus mgf012030m I 0.851
GSMUA_Achr8G10490_001 Musa acuminata GSMUA_Achr8G10490_001 I 0.702
OB07G20740 Oryza brachyantha OB07G20740 I 0.719
OGLUM07G13800 Oryza glumaepatula OGLUM07G13800 I 0.711
OLONG_014480 Oryza longistaminata OLONG_014480 I 0.711
ONIVA07G13300 Oryza nivara ONIVA07G13300 I 0.711
OPUNC07G13630 Oryza punctata OPUNC07G13630 I 0.711
ORUFI07G15090 Oryza rufipogon ORUFI07G15090 I 0.711
Q2WEL1_ORYSA Oryza sativa Q2WEL1_ORYSA D 0.702
OS07G0490200 Oryza sativa OS07G0490200 I 0.711
POPTR_0010s15160 Populus trichocarpa POPTR_0010s15160 I 0.842
POPTR_0008s10730 Populus trichocarpa POPTR_0008s10730 I 0.842
PRUPE_ppa001493mg Prunus persica PRUPE_ppa001493mg I 0.886
29889.m003269 Ricinus communis 29889.m003269 I 0.763
SapurV1A.0050s0650 Salix purpurea SapurV1A.0050s0650 I 0.833
SapurV1A.0060s0130 Salix purpurea SapurV1A.0060s0130 I 0.842
Solyc01g060170.2 Solanum lycopersicum Solyc01g060170.2 I 0.868
Solyc12g099340.1 Solanum lycopersicum Solyc12g099340.1 I 0.851
TCM_021327 Theobroma cacao TCM_021327 I 0.851
VIT_05s0077g01240 Vitis vinifera VIT_05s0077g01240 I 0.842