YBX1 (Cavia porcellus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSCPOG00000010888 T164493_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YBX1
M04661_2.00 		Homo sapiens
GRTGGWACR
YGTWCCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX 		1.000 1.000
YBX1
M10411_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q3 		1.000 1.000
YBX1
M10412_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q4 		1.000 1.000
YBX1
M04662_2.00 		Homo sapiens
GRTGKDRCD
HGYHMCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX 		1.000 1.000
NEMVEDRAFT_v1g104083
M01207_2.00 		Nematostella vectensis
NNNDDHRN
NYDHHNNN		 PBM
Lambert et al.(2019)
pTH9768 		0.818 0.818
cey-1
M01903_2.00 		Caenorhabditis elegans
NNNGRTRDD
HHYAYCNNN		 PBM
Weirauch et al.(2014)
pTH8991 		0.773 0.773
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000009780 CSD 59 128

Links

Other CSD family TFs
Other Cavia porcellus TFs

411 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_033300 Acremonium chrysogenum ACRE_033300 I 0.000
AB06842.1 Alternaria brassicicola AB06842.1 I 0.000
AOL_s00075g120 Arthrobotrys oligospora AOL_s00075g120 I 0.000
ARB_02051 Arthroderma benhamiae ARB_02051 I 0.000
MCYG_00633 Arthroderma otae MCYG_00633 I 0.000
fgenesh1_pg.00866_#_392 Aspergillus carbonarius fgenesh1_pg.00866_#_392 I 0.000
ACLA_039220 Aspergillus clavatus CADACLAG00003763 I 0.000
CADAFLAG00002509 Aspergillus flavus CADAFLAG00002509 I 0.000
AFUA_3G11330 Aspergillus fumigatus CADAFUAG00005023 I 0.000
ANIA_02911 Aspergillus nidulans CADANIAG00010178 I 0.000
CADANGAG00002223 Aspergillus niger CADANGAG00002223 I 0.000
CADAORAG00001285 Aspergillus oryzae CADAORAG00001285 I 0.000
EURHEDRAFT_81548 Aspergillus ruber EURHEDRAFT_81548 I 0.000
M437DRAFT_75856 Aureobasidium melanogenum M437DRAFT_75856 I 0.000
M438DRAFT_184342 Aureobasidium pullulans M438DRAFT_184342 I 0.000
AUEXF2481DRAFT_414412 Aureobasidium subglaciale AUEXF2481DRAFT_414412 I 0.000
BAUCODRAFT_49676 Baudoinia compniacensis BAUCODRAFT_49676 I 0.000
BBA_04813 Beauveria bassiana BBA_04813 I 0.000
COCC4DRAFT_39469 Bipolaris maydis COCC4DRAFT_39469 I 0.000
COCMIDRAFT_100301 Bipolaris oryzae COCMIDRAFT_100301 I 0.000
COCSADRAFT_216676 Bipolaris sorokiniana COCSADRAFT_216676 I 0.000
COCVIDRAFT_84814 Bipolaris victoriae COCVIDRAFT_84814 I 0.000
COCCADRAFT_110849 Bipolaris zeicola COCCADRAFT_110849 I 0.000
BDDG_06376 Blastomyces dermatitidis BDDG_06376 I 0.000
Bcin09g00920 Botrytis cinerea Bcin09g00920 I 0.000
PVAR5_7724 Byssochlamys spectabilis PVAR5_7724 I 0.000
A1O1_03167 Capronia coronata A1O1_03167 I 0.000
A1O3_01925 Capronia epimyces A1O3_01925 I 0.000
PV04_04779 Capronia semiimmersa PV04_04779 I 0.000
CTHT_0051900 Chaetomium thermophilum CTHT_0051900 I 0.000
Z519_09652 Cladophialophora bantiana Z519_09652 I 0.000
G647_04191 Cladophialophora carrionii G647_04191 I 0.000
PV07_07561 Cladophialophora immunda PV07_07561 I 0.000
A1O7_04497 Cladophialophora yegresii A1O7_04497 I 0.000
CPUR_07883 Claviceps purpurea CPUR_07883 I 0.000
CIMG_03698 Coccidioides immitis CIMG_03698 I 0.000
estExt_fgenesh1_pg.C_150146 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_150146 I 0.000
CFIO01_09498 Colletotrichum fioriniae CFIO01_09498 I 0.000
CGGC5_15082 Colletotrichum gloeosporioides CGGC5_15082 I 0.000
GLRG_04311 Colletotrichum graminicola GLRG_04311 I 0.000
CH063_00485 Colletotrichum higginsianum CH063_00485 I 0.000
Cob_09423 Colletotrichum orbiculare Cob_09423 I 0.000
CSUB01_02787 Colletotrichum sublineola CSUB01_02787 I 0.000
CCM_09124 Cordyceps militaris CCM_09124 I 0.000
estExt_Genewise1.C_71204 Cryphonectria parasitica estExt_Genewise1.C_71204 I 0.000
HMPREF1541_01690 Cyphellophora europaea HMPREF1541_01690 I 0.000
H072_1333 Dactylellina haptotyla H072_1333 I 0.000
DOTSEDRAFT_70140 Dothistroma septosporum DOTSEDRAFT_70140 I 0.000
EPUS_07920 Endocarpon pusillum EPUS_07920 I 0.000
UCREL1_7956 Eutypa lata UCREL1_7956 I 0.000
A1O9_00939 Exophiala aquamarina A1O9_00939 I 0.000
HMPREF1120_06731 Exophiala dermatitidis HMPREF1120_06731 I 0.000
Z517_11227 Fonsecaea pedrosoi Z517_11227 I 0.000
FFUJ_07310 Fusarium fujikuroi FFUJ_07310 I 0.000
FGRRES_10142 Fusarium graminearum FGRRES_10142 I 0.000
FOXG_05265 Fusarium oxysporum FOXG_05265 I 0.000
FPSE_02636 Fusarium pseudograminearum FPSE_02636 I 0.000
NechaG69482 Fusarium solani NechaG69482 I 0.000
FVEG_02866 Fusarium verticillioides FVEG_02866 I 0.000
GGTG_00729 Gaeumannomyces graminis GGTG_00729 I 0.000
M7I_5710 Glarea lozoyensis M7I_5710 I 0.000
CMQ_683 Grosmannia clavigera CMQ_683 I 0.000
HCBG_06790 Histoplasma capsulatum HCBG_06790 I 0.000
LEMA_P001490.1 Leptosphaeria maculans LEMA_P001490.1 I 0.000
MPH_10839 Macrophomina phaseolina MPH_10839 I 0.000
MAPG_05500 Magnaporthe poae MAPG_05500 I 0.000
MBM_07911 Marssonina brunnea MBM_07911 I 0.000
MAM_05099 Metarhizium album MAM_05099 I 0.000
MBR_04276 Metarhizium brunneum MBR_04276 I 0.000
MGU_04987 Metarhizium guizhouense MGU_04987 I 0.000
MAJ_05238 Metarhizium majus MAJ_05238 I 0.000
X797_004353 Metarhizium robertsii X797_004353 I 0.000
MCYG_00633 Microsporum canis MCYG_00633 I 0.000
MGYG_01329 Microsporum gypseum MGYG_01329 I 0.000
fgeneshMC_pg.6_#_568 Mucor circinelloides fgeneshMC_pg.6_#_568 I 0.000
fgeneshMC_pg.7_#_563 Mucor circinelloides fgeneshMC_pg.7_#_563 I 0.000
estExt_fgenesh1_pg.C_130141 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_130141 I 0.000
estExt_fgenesh1_pm.C_chr_10233 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_10233 I 0.000
estExt_Genewise1Plus.C_sca_5_chr5_3_00629 Nectria haematococca estExt_Genewise1Plus.C_sca_5_chr5_3_00629 I 0.000
UCRNP2_7443 Neofusicoccum parvum UCRNP2_7443 I 0.000
NFIA_065970 Neosartorya fischeri CADNFIAG00005978 I 0.000
asl-1 Neurospora crassa NCU01345 D 0.000
estExt_fgenesh2_pg.C_10593 Neurospora discreta estExt_fgenesh2_pg.C_10593 I 0.000
NEUTE1DRAFT_57442 Neurospora tetrasperma NEUTE1DRAFT_57442 I 0.000
OIDMADRAFT_24756 Oidiodendron maius OIDMADRAFT_24756 I 0.000
F503_00157 Ophiostoma piceae uamh F503_00157 I 0.000
PABG_02218 Paracoccidioides brasiliensis PABG_02218 I 0.000
PAAG_01945 Paracoccidioides sp lutzii PAAG_01945 I 0.000
Pc13g09580 Penicillium chrysogenum Pc13g09580 I 0.000
PDIP_29710 Penicillium digitatum PDIP_29710 I 0.000
PEX1_106440 Penicillium expansum PEX1_106440 I 0.000
PITC_062200 Penicillium italicum PITC_062200 I 0.000
PMAA_023170 Penicillium marneffei PMAA_023170 I 0.000
PDE_04903 Penicillium oxalicum PDE_04903 I 0.000
PCH_Pc13g09580 Penicillium rubens PCH_Pc13g09580 I 0.000
U727_00433320411 Penicillium solitum U727_00433320411 I 0.000
PFICI_13363 Pestalotiopsis fici PFICI_13363 I 0.000
SNOG_05677 Phaeosphaeria nodorum SNOG_05677 I 0.000
PODANS_2_1280 Podospora anserina PODANS_2_1280 I 0.000
MYCFIDRAFT_97819 Pseudocercospora fijiensis MYCFIDRAFT_97819 I 0.000
GMDG_05754 Pseudogymnoascus destructans GMDG_05754 I 0.000
V499_05475 Pseudogymnoascus pannorum V499_05475 I 0.000
PTT_11563 Pyrenophora teres PTT_11563 I 0.000
PTRG_01360 Pyrenophora triticirepentis PTRG_01360 N 0.000
Z518_09780 Rhinocladiella mackenziei Z518_09780 I 0.000
RO3G_02213 Rhizopus oryzae RO3G_02213 I 0.000
RO3G_11082 Rhizopus oryzae RO3G_11082 I 0.000
SAPIO_CDS10626 Scedosporium apiospermum SAPIO_CDS10626 I 0.000
SJAG_00979 Schizosaccharomyces japonicus SJAG_00979 N 0.000
SS1G_04913 Sclerotinia sclerotiorum SS1G_04913 I 0.000
SETTUDRAFT_28157 Setosphaeria turcica SETTUDRAFT_28157 I 0.000
SMAC_04034 Sordaria macrospora SMAC_04034 I 0.000
SEPMUDRAFT_147966 Sphaerulina musiva SEPMUDRAFT_147966 I 0.000
SPBR_05727 Sporothrix brasiliensis SPBR_05727 I 0.000
HMPREF1624_04302 Sporothrix schenckii HMPREF1624_04302 I 0.000
S40288_09027 Stachybotrys chartarum S40288_09027 I 0.000
S40285_01279 Stachybotrys chlorohalonata S40285_01279 I 0.000
SNOG_05677 Stagonospora nodorum SNOG_05677 I 0.000
PMAA_023170 Talaromyces marneffei PMAA_023170 I 0.000
TSTA_031640 Talaromyces stipitatus TSTA_031640 I 0.000
THITE_2106467 Thielavia terrestris THITE_2106467 I 0.000
UCRPA7_4570 Togninia minima UCRPA7_4570 I 0.000
VHEMI00377 Torrubiella hemipterigena VHEMI00377 I 0.000
TRIATDRAFT_39837 Trichoderma atroviride TRIATDRAFT_39837 I 0.000
TRIREDRAFT_103372 Trichoderma reesei TRIREDRAFT_103372 I 0.000
TRIREDRAFT_109538 Trichoderma reesei TRIREDRAFT_109538 N 0.000
TRIVIDRAFT_229017 Trichoderma virens TRIVIDRAFT_229017 I 0.000
TRIVIDRAFT_57711 Trichoderma virens TRIVIDRAFT_57711 N 0.000
TEQG_05503 Trichophyton equinum TEQG_05503 I 0.000
H102_07567 Trichophyton rubrum H102_07567 I 0.000
H105_07594 Trichophyton soudanense H105_07594 I 0.000
TESG_05743 Trichophyton tonsurans TESG_05743 I 0.000
TRV_05879 Trichophyton verrucosum TRV_05879 I 0.000
GSTUM_00002889001 Tuber melanosporum GSTUM_00002889001 I 0.000
UREG_07457 Uncinocarpus reesii UREG_07457 I 0.000
UV8b_5734 Ustilaginoidea virens UV8b_5734 I 0.000
PV09_06343 Verruconis gallopava PV09_06343 I 0.000
VDAG_08676 Verticillium dahliae VDAG_08676 I 0.000
Mycgr3G98304 Zymoseptoria tritici Mycgr3G98304 I 0.000