Gfo_R011576 (Geospiza fortis)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 Gfo_R011576 T165316_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.946 0.946
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.946 0.946
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R011576 CSD 1 37

Links

Other CSD family TFs
Other Geospiza fortis TFs

128 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000008068 Astyanax mexicanus ENSAMXG00000008068 N 0.000
BTMF_0000429201 Brugia timori BTMF_0000429201 I 0.000
rbpjl Danio rerio ENSDARG00000074148 N 0.000
D915_08967 Fasciola hepatica D915_08967 I 0.000
ENSGMOG00000015183 Gadus morhua ENSGMOG00000015183 N 0.000
ENSGACG00000000023 Gasterosteus aculeatus ENSGACG00000000023 N 0.000
GPLIN_001569000 Globodera pallida GPLIN_001569000 I 0.000
RBPJ Homo sapiens ENSG00000168214 D 0.000
ENSLOCG00000007645 Lepisosteus oculatus ENSLOCG00000007645 N 0.000
augustus_masked-nMf.1.1.scaf33168-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf33168-processed-gene-0.0 I 0.000
NECAME_17145 Necator americanus NECAME_17145 I 0.000
ENSONIG00000005364 Oreochromis niloticus ENSONIG00000005364 N 0.000
ENSPFOG00000016929 Poecilia formosa ENSPFOG00000016929 N 0.000
scaffold595-EXSNAP2012.9 Pristionchus exspectatus scaffold595-EXSNAP2012.9 I 0.000
SCUD_0000326701 Schistosoma curassoni SCUD_0000326701 I 0.000
Sjc_0108400 Schistosoma japonicum Sjc_0108400 I 0.000
SMRZ_0000802101 Schistosoma margrebowiei SMRZ_0000802101 I 0.000
SMTD_0001089601 Schistosoma mattheei SMTD_0001089601 I 0.000
SMUV_0001013801 Syphacia muris SMUV_0001013801 I 0.000
ENSTRUG00000000475 Takifugu rubripes ENSTRUG00000000475 N 0.000
rbpjl Tetraodon nigroviridis ENSTNIG00000005221 N 0.000
TRE_0000568701 Trichobilharzia regenti TRE_0000568701 I 0.000
ENSVPAG00000005031 Vicugna pacos ENSVPAG00000005031 I 0.000
ENSXMAG00000003601 Xiphophorus maculatus ENSXMAG00000003601 N 0.000