nRc.2.0.1.g10725 (Romanomermis culicivorax)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 nRc.2.0.1.g10725 T165863_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
cey-1
M01903_2.00 		Caenorhabditis elegans
NNNGRTRDD
HHYAYCNNN		 PBM
Weirauch et al.(2014)
pTH8991 		0.818 0.818
YBX1
M04661_2.00 		Homo sapiens
GRTGGWACR
YGTWCCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX 		0.788 0.788
YBX1
M10411_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q3 		0.788 0.788
YBX1
M10412_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q4 		0.788 0.788
YBX1
M04662_2.00 		Homo sapiens
GRTGKDRCD
HGYHMCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX 		0.788 0.788
NEMVEDRAFT_v1g104083
M01207_2.00 		Nematostella vectensis
NNNDDHRN
NYDHHNNN		 PBM
Lambert et al.(2019)
pTH9768 		0.773 0.773
Smp_097750
M01208_2.00 		Schistosoma mansoni
TAGATAGA
TCTATCTA		 PBM
Lambert et al.(2019)
pTH7807 		0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nRc.2.0.1.t10725-RA CSD 59 128

Links

Other CSD family TFs
Other Romanomermis culicivorax TFs

348 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ALNC14_126360 Albugo laibachii ALNC14_126360 N
ANCCAN_29654 Ancylostoma caninum ANCCAN_29654 N
ANCCEY_08672 Ancylostoma ceylanicum ANCCEY_08672 N
ACAC_0000409101 Angiostrongylus cantonensis ACAC_0000409101 N
ACOC_0001323101 Angiostrongylus costaricensis ACOC_0001323101 N
AALB007196 Anopheles albimanus AALB007196 N
AARA009694 Anopheles arabiensis AARA009694 N
AATE006267 Anopheles atroparvus AATE006267 N
ACHR002403 Anopheles christyi ACHR002403 N
ACOM033320 Anopheles coluzzii ACOM033320 N
ACUA003510 Anopheles culicifacies ACUA003510 N
ADAC009894 Anopheles darlingi ADAC009894 N
ADIR002941 Anopheles dirus ADIR002941 N
AEPI008570 Anopheles epiroticus AEPI008570 N
AFAF018499 Anopheles farauti AFAF018499 N
AFUN011346 Anopheles funestus AFUN011346 N
AGAP004110 Anopheles gambiae AGAP004110 N
AMAM021723 Anopheles maculatus AMAM021723 N
AMEC005071 Anopheles melas AMEC005071 N
AMEM002948 Anopheles merus AMEM002948 N
AMIN003838 Anopheles minimus AMIN003838 N
AQUA009805 Anopheles quadriannulatus AQUA009805 N
ASIS023527 Anopheles sinensis ASIS023527 N
ASTEI04275 Anopheles stephensi ASTEI04275 N
ALUE_0001851001 Ascaris lumbricoides ALUE_0001851001 N
ASU_10445 Ascaris suum ASU_10445 N
BGIBMGA013514 Bombyx mori BGIBMGA013514 N
CBN09380 Caenorhabditis brenneri CBN09380 N
Y73E7A.1 Caenorhabditis elegans WBGene00022268 N
CJA05209 Caenorhabditis japonica CJA05209 N
CRE03905 Caenorhabditis remanei CRE03905 N
Cflo_06133--XP_394373.1_APIME Camponotus floridanus Cflo_06133--XP_394373.1_APIME I
CapteG224864 Capitella teleta CapteG224864 I
ENSCING00000023833 Ciona intestinalis ENSCING00000023833 N
CGI_10019404 Crassostrea gigas CGI_10019404 N
Chro.20098 Cryptosporidium hominis Chro.20098 N
cgd2_870 Cryptosporidium parvum cgd2_870 N
CpipJ_CPIJ005084 Culex pipiens CpipJ_CPIJ005084 N
CPIJ005084 Culex quinquefasciatus CPIJ005084 N
KGM_20190 Danaus plexippus KGM_20190 I
DICVIV_03175 Dictyocaulus viviparus DICVIV_03175 N
GH18160 Drosophila grimshawi FBgn0125628 I
GK13574 Drosophila willistoni FBgn0215582 I
GE25578 Drosophila yakuba FBgn0242642 I
ETH_00032160 Eimeria tenella ETH_00032160 N
GPUH_0000676401 Gongylonema pulchrum GPUH_0000676401 N
HCOI00594600 Haemonchus contortus HCOI00594600 N
HPLM_0000348901 Haemonchus placei HPLM_0000348901 N
HHAL005242-PA Halyomorpha halys HHAL005242-PA I
HMEL009197 Heliconius melpomene HMEL009197 N
HPBE_0001252601 Heligmosomoides bakeri HPBE_0001252601 N
HelroG66455 Helobdella robusta HelroG66455 N
MCINX012524 Melitaea cinxia MCINX012524 I
maker-nMf.1.1.scaf18285-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf18285-snap-gene-0.4 N
MhA1_Contig1250.frz3.gene10 Meloidogyne hapla MhA1_Contig1250.frz3.gene10 N
Minc12734 Meloidogyne incognita Minc12734 N
ML11467a Mnemiopsis leidyi ML11467a N
NV13812 Nasonia vitripennis NV13812 I
NECAME_12352 Necator americanus NECAME_12352 N
NEMVEDRAFT_v1g201358 Nematostella vectensis NEMVEDRAFT_v1g201358 I
NCLIV_051130 Neospora caninum NCLIV_051130 N
NBR_0000605501 Nippostrongylus brasiliensis NBR_0000605501 N
Ocbimv22013575m.g Octopus bimaculoides Ocbimv22013575m.g I
OESDEN_05486 Oesophagostomum dentatum OESDEN_05486 N
PEQ_0000413701 Parascaris equorum PEQ_0000413701 N
fgenesh1_pg.C_scaffold_73784000001 Phytophthora capsici fgenesh1_pg.C_scaffold_73784000001 N
estExt_fgenesh1_kg.C_80399 Phytophthora capsici estExt_fgenesh1_kg.C_80399 N
fgenesh_scip_prom.46568.2049 Phytophthora kernoviae fgenesh_scip_prom.46568.2049 N
F443_19335 Phytophthora parasitica F443_19335 N
Physo132366 Phytophthora sojae Physo132366 N
maker-pir_contig_430-fgenesh-gene-0.3 Pythium irregulare maker-pir_contig_430-fgenesh-gene-0.3 N
maker-piw_contig_1911-snap-gene-0.6 Pythium iwayamai maker-piw_contig_1911-snap-gene-0.6 N
PYU1_G003004 Pythium ultimum PYU1_G003004 N
RPRC009760 Rhodnius prolixus RPRC009760 N
SPRG_06372 Saprolegnia parasitica SPRG_06372 N
TELCIR_11967 Teladorsagia circumcincta TELCIR_11967 N
TCLT_0001081001 Thelazia callipaeda TCLT_0001081001 N
TGME49_037260 Toxoplasma gondii TGME49_037260 N
D917_07703 Trichinella nativa D917_07703 N
EFV51436 Trichinella spiralis EFV51436 N