Alligator_sinensis_CCG006987.1 (Alligator sinensis)
CSL

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF09271 (LAG1-DNAbind) IPR015351 Alligator_sinensis_CCG006987.1 T166294_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RBPJ
M00735_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
GST-CSL_Fig2 		1.000 1.000
RBPJ
M00736_2.00 		Homo sapiens
NNNYTCHCAN
NTGDGARNNN		 PBM
DelBianco et al.(2010)
GST-CSL_Fig4 		1.000 1.000
RBPJ
M00737_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
GST-CSL-NOTCH1 		1.000 1.000
RBPJ
M00738_2.00 		Homo sapiens
NBTCHCAN
NTGDGAVN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_CSL-6His_MAML1 		1.000 1.000
RBPJ
M00739_2.00 		Homo sapiens
NNBTCHCAN
NTGDGAVNN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_CSL-6His 		1.000 1.000
RBPJ
M00740_2.00 		Homo sapiens
NNNYTCYCAN
NTGRGARNNN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_Fig2 		1.000 1.000
RBPJ
M00741_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
MAML1-CSL-GST-NOTCH1_Fig2 		1.000 1.000
RBPJ
M00742_2.00 		Homo sapiens
NDYTCHCAB
VTGDGARHN		 PBM
DelBianco et al.(2010)
MAML1-CSL-GST-NOTCH1_Fig5 		1.000 1.000
RBPJ
M08105_2.00 		Homo sapiens
NNTTCCCABN
NVTGGGAANN		 ChIP-seq
Mathelier et al.(2014)
MA1116.1 		1.000 1.000
RBPJ
M09020_2.00 		Homo sapiens
BTTCCCASVVN
NBBSTGGGAAV		 Misc
Kulakovskiy et al.(2013)
SUH_HUMAN.H11MO.0.A 		1.000 1.000
Rbpj
M09021_2.00 		Mus musculus
NBTTCCCASVV
BBSTGGGAAVN		 Misc
Kulakovskiy et al.(2013)
SUH_MOUSE.H11MO.0.A 		1.000 1.000
RBPJ
M10413_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RBPJK_01 		1.000 1.000
RBPJ
M10414_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RBPJK_Q4 		1.000 1.000
Su(H)
M10415_2.00 		Drosophila melanogaster
VGKTTCYCACRVY
RBYGTGRGAAMCB		 Transfac
Matys et al.(2006)
I$SUH_01 		0.794 0.794
Su(H)
M08455_2.00 		Drosophila melanogaster
HBHNVGKTTCYCACRV
BYGTGRGAAMCBNDVD		 COMPILED
Mathelier et al.(2014)
MA0085.1 		0.794 0.794
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG006987.1 CSL 38 168

Links

Other CSL family TFs
Other Alligator sinensis TFs

165 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI2G03830 Brachypodium distachyon BRADI2G03830 I 0.000
BRADI2G34600 Brachypodium distachyon BRADI2G34600 N 0.000
MLOC_69121 Hordeum vulgare MLOC_69121 N 0.000
LPERR01G03590 Leersia perrieri LPERR01G03590 I 0.000
LPERR05G03980 Leersia perrieri LPERR05G03980 N 0.000
OBART05G04450 Oryza barthii OBART05G04450 N 0.000
OBART01G03950 Oryza barthii OBART01G03950 N 0.000
OB05G14140 Oryza brachyantha OB05G14140 N 0.000
OB01G13800 Oryza brachyantha OB01G13800 N 0.000
ORGLA01G0034700 Oryza glaberrima ORGLA01G0034700 N 0.000
ORGLA05G0041400 Oryza glaberrima ORGLA05G0041400 N 0.000
OGLUM01G04250 Oryza glumaepatula OGLUM01G04250 N 0.000
OGLUM05G04370 Oryza glumaepatula OGLUM05G04370 N 0.000
BGIOSGA002833 Oryza indica BGIOSGA002833 N 0.000
OLONG_015419 Oryza longistaminata OLONG_015419 N 0.000
OMERI01G03850 Oryza meridionalis OMERI01G03850 N 0.000
OMERI05G04410 Oryza meridionalis OMERI05G04410 N 0.000
ONIVA05G04820 Oryza nivara ONIVA05G04820 N 0.000
ONIVA01G04390 Oryza nivara ONIVA01G04390 N 0.000
OPUNC01G03610 Oryza punctata OPUNC01G03610 N 0.000
OPUNC05G04080 Oryza punctata OPUNC05G04080 N 0.000
ORUFI01G04050 Oryza rufipogon ORUFI01G04050 N 0.000
ORUFI05G04670 Oryza rufipogon ORUFI05G04670 N 0.000
OS05G0163900 Oryza sativa OS05G0163900 N 0.000
Pavir.J32610 Panicum virgatum Pavir.J32610 N 0.000
Pavir.Ea00439 Panicum virgatum Pavir.Ea00439 I 0.000
Pavir.Ca01107 Panicum virgatum Pavir.Ca01107 I 0.000
Si002655m.g Setaria italica Si002655m.g I 0.000
Si012213m.g Setaria italica Si012213m.g N 0.000
Sb09g004820 Sorghum bicolor Sb09g004820 N 0.000
Sb03g005250 Sorghum bicolor Sb03g005250 N 0.000
Traes_1AS_96F0745A2 Triticum aestivum Traes_1AS_96F0745A2 N 0.000
Traes_1BS_1F372BED3 Triticum aestivum Traes_1BS_1F372BED3 N 0.000
Traes_1DS_CD79239C8 Triticum aestivum Traes_1DS_CD79239C8 N 0.000
TRIUR3_12818 Triticum urartu TRIUR3_12818 N 0.000
GRMZM2G088443 Zea mays GRMZM2G088443 I 0.000
GRMZM2G369629 Zea mays GRMZM2G369629 N 0.000