CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Kdm2a
(
Mus musculus
)
CxxC
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02008 (zf-CXXC)
IPR002857
ENSMUSG00000054611
T168127_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
KDM2A
M01915_2.00
Meleagris gallopavo
NNNNYRNNNN
NNNNYRNNNN
PBM
Weirauch et al.(2014)
pTH9212
0.936
0.936
kdm2ba
M01909_2.00
Danio rerio
NNNNCGN
NCGNNNN
PBM
Weirauch et al.(2014)
pTH8577
0.809
0.809
KDM2B
M01911_2.00
Homo sapiens
NNNNNNCGN
NCGNNNNNN
PBM
Weirauch et al.(2014)
pTH9191
0.787
0.787
FBXL19
M01916_2.00
Tetraodon nigroviridis
NNNNCGNN
NNCGNNNN
PBM
Weirauch et al.(2014)
pTH8570
0.787
0.787
A6H8I1_DANRE
M01906_2.00
Danio rerio
CGTACGYA
TRCGTACG
PBM
Weirauch et al.(2014)
pTH9257
0.745
0.745
kdm2aa
M01910_2.00
Danio rerio
NCGNNNNNN
NNNNNNCGN
PBM
Weirauch et al.(2014)
pTH8585
0.702
0.702
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000047683
CxxC
563
609
GARRRRVRCRKCKACVQGECGVCHYCRDMKKFGGPGRMKQSCVLRQC
ENSMUSP00000076698
CxxC
563
609
GARRRRVRCRKCKACVQGECGVCHYCRDMKKFGGPGRMKQSCVLRQC
ENSMUSP00000135745
CxxC
123
169
GARRRRVRCRKCKACVQGECGVCHYCRDMKKFGGPGRMKQSCVLRQC
Links
Other
CxxC
family TFs
Other
Mus musculus
TFs
204 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
nAv.1.0.1.g00656
Acanthocheilonema viteae
nAv.1.0.1.g00656
N
Alligator_sinensis_CCG000427.1
Alligator sinensis
Alligator_sinensis_CCG000427.1
N
ANCCAN_18993
Ancylostoma caninum
ANCCAN_18993
N
ANCCEY_09797
Ancylostoma ceylanicum
ANCCEY_09797
N
ANCDUO_16051
Ancylostoma duodenale
ANCDUO_16051
N
ACOC_0001090601
Angiostrongylus costaricensis
ACOC_0001090601
N
ASIM_0000354801
Anisakis simplex
ASIM_0000354801
N
ACUA011690
Anopheles culicifacies
ACUA011690
N
AGAP000061
Anopheles gambiae
AGAP000061
I
ACEP10767
Atta cephalotes
ACEP10767
N
BGLB010771
Biomphalaria glabrata
BGLB010771
N
BGIBMGA013353
Bombyx mori
BGIBMGA013353
N
gw.66.200.1
Branchiostoma floridae
gw.66.200.1
N
Bm2283
Brugia malayi
Bm2283
N
Cflo_07825--XP_624996.2_APIME
Camponotus floridanus
Cflo_07825--XP_624996.2_APIME
N
ONECUT3
Canis familiaris
ENSCAFG00000019469
N
Cmyd_10014202
Chelonia mydas
Cmyd_10014202
N
Cmyd_10009028
Chelonia mydas
Cmyd_10009028
N
Cmyd_10006709
Chelonia mydas
Cmyd_10006709
N
CLEC007920
Cimex lectularius
CLEC007920
N
ENSDORG00000002300
Dipodomys ordii
ENSDORG00000002300
N
GD24376
Drosophila simulans
FBgn0195717
N
ECPE_0000369101
Echinostoma caproni
ECPE_0000369101
N
EEL_0001075201
Elaeophora elaphi
EEL_0001075201
N
EVEC_0000948201
Enterobius vermicularis
EVEC_0000948201
N
D915_04001
Fasciola hepatica
D915_04001
N
ENSGMOG00000012508
Gadus morhua
ENSGMOG00000012508
N
GPUH_0000805401
Gongylonema pulchrum
GPUH_0000805401
N
HPLM_0000364001
Haemonchus placei
HPLM_0000364001
N
HHAL003723-PA
Halyomorpha halys
HHAL003723-PA
N
ISCW015628
Ixodes scapularis
ISCW015628
N
ENSLACG00000003028
Latimeria chalumnae
ENSLACG00000003028
N
LDEC016076
Leptinotarsa decemlineata
LDEC016076
N
LCUP017328
Lucilia cuprina
LCUP017328
N
MCINX014974
Melitaea cinxia
MCINX014974
N
MCOS_0000769501
Mesocestoides corti
MCOS_0000769501
N
Myotis_brandtii_Onecut1_10025993
Myotis brandtii
Myotis_brandtii_Onecut1_10025993
N
NECAME_16148
Necator americanus
NECAME_16148
N
NBR_0001501501
Nippostrongylus brasiliensis
NBR_0001501501
N
Ocbimv22034219m.g
Octopus bimaculoides
Ocbimv22034219m.g
N
OESDEN_04593
Oesophagostomum dentatum
OESDEN_04593
N
SNAPOd2T00024998001
Oikopleura dioica
SNAPOd2T00024998001
N
OFLC_0001427401
Onchocerca flexuosa
OFLC_0001427401
N
nOo.2.0.1.g07179
Onchocerca ochengi
nOo.2.0.1.g07179
N
nOo.2.0.1.g05355
Onchocerca ochengi
nOo.2.0.1.g05355
N
WBGene00240888
Onchocerca volvulus
WBGene00240888
N
Ogr15245
Ophisaurus gracilis
Ogr15245
N
ENSOANG00000004576
Ornithorhynchus anatinus
ENSOANG00000004576
N
ONECUT1
Pan troglodytes
ENSPTRG00000007090
I
ENSPMAG00000007938
Petromyzon marinus
ENSPMAG00000007938
N
scaffold144-EXSNAP2012.47
Pristionchus exspectatus
scaffold144-EXSNAP2012.47
N
PPA07282
Pristionchus pacificus
PPA07282
N
PXEA_0001210701
Protopolystoma xenopodis
PXEA_0001210701
N
RPRC001057
Rhodnius prolixus
RPRC001057
N
nRc.2.0.1.g06026
Romanomermis culicivorax
nRc.2.0.1.g06026
N
ENSSHAG00000018152
Sarcophilus harrisii
ENSSHAG00000018152
I
ENSSHAG00000014706
Sarcophilus harrisii
ENSSHAG00000014706
N
SMRZ_0001320201
Schistosoma margrebowiei
SMRZ_0001320201
N
SMTD_0000822401
Schistosoma mattheei
SMTD_0000822401
N
SROB_0001256401
Schistosoma rodhaini
SROB_0001256401
N
SINV23673
Solenopsis invicta
SINV23673
N
L889_g23716
Steinernema feltiae
L889_g23716
I
L898_g28854
Steinernema monticolum
L898_g28854
I
L892_g9685
Steinernema scapterisci
L892_g9685
N
SVUK_0000254701
Strongylus vulgaris
SVUK_0000254701
N
ONECUT2
Sus scrofa
ENSSSCG00000004540
N
SMUV_0001096901
Syphacia muris
SMUV_0001096901
N
ENSTRUG00000003652
Takifugu rubripes
ENSTRUG00000003652
N
onecut1
Takifugu rubripes
ENSTRUG00000000994
N
ENSTNIG00000003240
Tetraodon nigroviridis
ENSTNIG00000003240
N
D917_03504
Trichinella nativa
D917_03504
N
EFV55311
Trichinella spiralis
EFV55311
N
EFV46387
Trichinella spiralis
EFV46387
N
D918_08254
Trichuris suis
D918_08254
N
onecut2
Xenopus tropicalis
XB-GENE-485246
N
ENSXMAG00000012192
Xiphophorus maculatus
ENSXMAG00000012192
N
L798_07541
Zootermopsis nevadensis
L798_07541
N