CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Carubv10019341m.g *(Capsella rubella)* Dof
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF02701 (zf-Dof)	IPR003851	Carubv10019341m.g	T171702_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
DOF4.3 M06857_2.00	Arabidopsis thaliana	AAAGNYRCTTT	AAAGYRNCTTT	Dap-seq OMalley et al.(2016) dof43_col_a	0.729	0.729
DOF4.3 M06858_2.00	Arabidopsis thaliana	NWAAAGHRVCTTTW	WAAAGBYDCTTTWN	Dap-seq OMalley et al.(2016) dof43_colamp_a	0.729	0.729
PBF M02675_2.00	Zea mays	RCTTT	AAAGY	SELEX Mathelier et al.(2014) MA0064.1	0.729	0.729
PBF M10438_2.00	Zea mays	BBDCTTTWNWD	HWNWAAAGHVV	Transfac Matys et al.(2006) P$PBF_01	0.729	0.729
DOF4.5 M06859_2.00	Arabidopsis thaliana	AAAKYHDCTTTWTN	NAWAAAGHDRMTTT	Dap-seq OMalley et al.(2016) dof45_col_a	0.712	0.712
DOF4.5 M06860_2.00	Arabidopsis thaliana	WAAAGYYDCTTTWDN	NHWAAAGHRRCTTTW	Dap-seq OMalley et al.(2016) dof45_colamp_a	0.712	0.712
DOF5.7 M00862_2.00	Arabidopsis thaliana	NNNCKTTN	NAAMGNNN	PBM Franco-Zorrilla et al.(2014) Dof5.7	0.695	0.695
Q6RK62_WHEAT M10441_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PBF_Q2_01	0.695	0.695
DOF4.7 M01945_2.00	Arabidopsis thaliana	NCKTTHNNN	NNNDAAMGN	PBM Weirauch et al.(2014) pTH7189	0.678	0.678
PK07031.1 M01216_2.00	Cannabis sativa	NCKTTHN	NDAAMGN	PBM Lambert et al.(2019) pTH11435	0.678	0.678
PK10955.1 M01217_2.00	Cannabis sativa	VCTTTWNN	NNWAAAGB	PBM Lambert et al.(2019) pTH10264	0.678	0.678
DOF4.7 M06861_2.00	Arabidopsis thaliana	HHHHYHHHNHHHHHHHWWTWWCTTTTTN	NAAAAAGWWAWWDDDDDDDNDDDRDDDD	Dap-seq OMalley et al.(2016) At4g38000_col_a	0.678	0.678
DOF4.7 M06862_2.00	Arabidopsis thaliana	NYWACTTTWTB	VAWAAAGTWRN	Dap-seq OMalley et al.(2016) At4g38000_colamp_a	0.678	0.678
DOF3.1 M01942_2.00	Arabidopsis thaliana	NCKTTNNN	NNNAAMGN	PBM Weirauch et al.(2014) pTH8190	0.661	0.661
DOF5.4 M01948_2.00	Arabidopsis thaliana	NDCGTTAWCN	NGWTAACGHN	PBM Weirauch et al.(2014) pTH7160	0.661	0.661
DOF5.4 M01949_2.00	Arabidopsis thaliana	NWACGTTWHNN	NNDWAACGTWN	PBM Weirauch et al.(2014) pTH7535	0.661	0.661
PK03929.1 M01214_2.00	Cannabis sativa	NNNCTTTWNN	NNWAAAGNNN	PBM Lambert et al.(2019) pTH10165	0.661	0.661
PK05671.1 M01215_2.00	Cannabis sativa	NCDWWNNN	NNNWWHGN	PBM Lambert et al.(2019) pTH10101	0.661	0.661
PK14080.1 M01218_2.00	Cannabis sativa	NCDTTHNN	NNDAAHGN	PBM Lambert et al.(2019) pTH10123	0.661	0.661
DOF1.7 M06833_2.00	Arabidopsis thaliana	HNNHWTYWNCTTTTYNHNHHN	NDDNDNRAAAAGNWRAWDNND	Dap-seq OMalley et al.(2016) Adof1_col_a	0.661	0.661
DOF1.7 M06834_2.00	Arabidopsis thaliana	NNHNNYWRCTTTTTNNHHNNH	DNNDDNNAAAAAGYWRNNDNN	Dap-seq OMalley et al.(2016) Adof1_colamp_a	0.661	0.661
DOF2.2 M06839_2.00	Arabidopsis thaliana	HHHYHHHHYWTYHNCTTTTTN	NAAAAAGNDRAWRDDDDRDDD	Dap-seq OMalley et al.(2016) AT2G28810_col_a	0.661	0.661
DOF2.2 M06840_2.00	Arabidopsis thaliana	NYHNCTTTWTNNNHH	DDNNNAWAAAGNDRN	Dap-seq OMalley et al.(2016) AT2G28810_colamp_a	0.661	0.661
DOF5.4 M06865_2.00	Arabidopsis thaliana	DNWNYHMCTTTTTN	NAAAAAGKDRNWNH	Dap-seq OMalley et al.(2016) OBP4_col_a	0.661	0.661
DOF5.4 M06866_2.00	Arabidopsis thaliana	HWDYHVCTTTTTNNNHHNH	DNDDNNNAAAAAGBDRHWD	Dap-seq OMalley et al.(2016) OBP4_colamp_a	0.661	0.661
DOF2.5 M01212_2.00	Arabidopsis thaliana	NNNCKTTWNN	NNWAAMGNNN	PBM Lambert et al.(2019) pTH11562	0.644	0.644
DOF3.2 M01943_2.00	Arabidopsis thaliana	NHDNNNNN	NNNNNHDN	PBM Weirauch et al.(2014) pTH7183	0.644	0.644
DOF5.6 M01063_2.00	Arabidopsis thaliana	NYDDWNNNN	NNNNWHHRN	PBM Sullivan et al.(2014) pTH7192	0.644	0.644
DOF5.6 M01950_2.00	Arabidopsis thaliana	NCKTTWNN	NNWAAMGN	PBM Weirauch et al.(2014) pTH7655	0.644	0.644
PK01144.1 M01213_2.00	Cannabis sativa	NCTTTWN	NWAAAGN	PBM Lambert et al.(2019) pTH10160	0.644	0.644
PK20317.1 M01221_2.00	Cannabis sativa	CKTTWNN	NNWAAMG	PBM Lambert et al.(2019) pTH11298	0.644	0.644
DOF3.2 M06847_2.00	Arabidopsis thaliana	NYHVCTTTTTNNHHTHHNN	NNDDADDNNAAAAAGBDRN	Dap-seq OMalley et al.(2016) At3g45610_col_a	0.644	0.644
DOF3.2 M06848_2.00	Arabidopsis thaliana	NNHDDYHVCTTTTTB	VAAAAAGBDRHHDNN	Dap-seq OMalley et al.(2016) At3g45610_colamp_a	0.644	0.644
DOF5.6 M06867_2.00	Arabidopsis thaliana	HHTYHNCTTTTTNHHHHHHHH	DDDDDDDDNAAAAAGNDRADD	Dap-seq OMalley et al.(2016) At5g62940_col_a	0.644	0.644
DOF2.5 M06843_2.00	Arabidopsis thaliana	DYHMCTTTTTN	NAAAAAGKDRH	Dap-seq OMalley et al.(2016) DAG2_col_a	0.644	0.644
DOF2.5 M06844_2.00	Arabidopsis thaliana	HWDYHMCTTTTTN	NAAAAAGKDRHWD	Dap-seq OMalley et al.(2016) DAG2_colamp_a	0.644	0.644
DOF3.4 M06851_2.00	Arabidopsis thaliana	NNNHYHYHHHWYYHNCTTTWB	VWAAAGNDRRWDDDRDRDNNN	Dap-seq OMalley et al.(2016) OBP1_col_a	0.644	0.644
Dof3 M02676_2.00	Zea mays	BRCTTT	AAAGYV	SELEX Mathelier et al.(2014) MA0021.1	0.644	0.644
Dof3 M10439_2.00	Zea mays	NBNCTTTNNBN	NVNNAAAGNVN	Transfac Matys et al.(2006) P$DOF3_01	0.644	0.644
DOF1.8 M01939_2.00	Arabidopsis thaliana	NNNCKTTHNN	NNDAAMGNNN	PBM Weirauch et al.(2014) pTH7256	0.627	0.627
DOF1.8 M01062_2.00	Arabidopsis thaliana	NHVCTTTWH	DWAAAGBDN	PBM Sullivan et al.(2014) pTH7653	0.627	0.627
DOF2.4 M01940_2.00	Arabidopsis thaliana	NCKTTWN	NWAAMGN	PBM Weirauch et al.(2014) pTH7912	0.627	0.627
DOF5.3 M01947_2.00	Arabidopsis thaliana	CKTTNNN	NNNAAMG	PBM Weirauch et al.(2014) pTH7182	0.627	0.627
e_gw1.170.52.1 M01952_2.00	Physcomitrella patens	NNNCTTTHNN	NNDAAAGNNN	PBM Weirauch et al.(2014) pTH8464	0.627	0.627
gw1.12.257.1 M01955_2.00	Physcomitrella patens	NNDDNNN	NNNHHNN	PBM Weirauch et al.(2014) pTH8651	0.627	0.627
PK15337.1 M01219_2.00	Cannabis sativa	NCTTTHN	NDAAAGN	PBM Lambert et al.(2019) pTH10186	0.627	0.627
PK20555.1 M01222_2.00	Cannabis sativa	NNNCTTTWNN	NNWAAAGNNN	PBM Lambert et al.(2019) pTH10144	0.627	0.627
PK23763.1 M01224_2.00	Cannabis sativa	NNNCTTTWN	NWAAAGNNN	PBM Lambert et al.(2019) pTH10194	0.627	0.627
DOF1.8 M06835_2.00	Arabidopsis thaliana	WWWYHMCTTTTTNNNHNHW	WDNDNNNAAAAAGKDRWWW	Dap-seq OMalley et al.(2016) At1g64620_100ng20cy_b	0.627	0.627
DOF1.8 M06836_2.00	Arabidopsis thaliana	NHHMCTTTTTN	NAAAAAGKDDN	Dap-seq OMalley et al.(2016) At1g64620_colamp_a	0.627	0.627
AT3G52440 M06852_2.00	Arabidopsis thaliana	DYHMCTTTWTN	NAWAAAGKDRH	Dap-seq OMalley et al.(2016) AT3G52440_col_a	0.627	0.627
AT3G52440 M06853_2.00	Arabidopsis thaliana	WWDDYHMCTTTTTNNHHYYWW	WWRRDDNNAAAAAGKDRHHWW	Dap-seq OMalley et al.(2016) AT3G52440_colamp_a	0.627	0.627
DOF5.1 M06863_2.00	Arabidopsis thaliana	HYHYWYHHHYTTWNCTTTTTN	NAAAAAGNWAARDDDRWRDRD	Dap-seq OMalley et al.(2016) AT5G02460_col_a	0.627	0.627
DOF5.1 M06864_2.00	Arabidopsis thaliana	NHDYHRCTTTWTNNHNNHN	NDNNDNNAWAAAGYDRHDN	Dap-seq OMalley et al.(2016) AT5G02460_colamp_a	0.627	0.627
DOF5.8 M06868_2.00	Arabidopsis thaliana	HHNHHYHHHHYTTTHNCTTTTKNNHHNHW	WDNDDNNMAAAAGNDAAARDDDDRDDNDD	Dap-seq OMalley et al.(2016) AT5G66940_col_a	0.627	0.627
DOF5.8 M06869_2.00	Arabidopsis thaliana	NNHNDYWRCTTTTTNNHYHNH	DNDRDNNAAAAAGYWRHNDNN	Dap-seq OMalley et al.(2016) AT5G66940_colamp_a	0.627	0.627
DOF2.4 M06841_2.00	Arabidopsis thaliana	HHWWTTHMCTTTTTN	NAAAAAGKDAAWWDD	Dap-seq OMalley et al.(2016) dof24_col_a	0.627	0.627
DOF2.4 M06842_2.00	Arabidopsis thaliana	HHMCTTTWTNNNNHN	NDNNNNAWAAAGKDD	Dap-seq OMalley et al.(2016) dof24_colamp_a	0.627	0.627
DOF4.2 M06856_2.00	Arabidopsis thaliana	NNHWWWRCCTTTTTNNHNH	DNDNNAAAAAGGYWWWDNN	Dap-seq OMalley et al.(2016) dof42_col_a	0.627	0.627
OBP3 M06854_2.00	Arabidopsis thaliana	BTHWCTTTTYNHYTTYWYYHH	DDRRWRAARDNRAAAAGWDAV	Dap-seq OMalley et al.(2016) OBP3_col_a	0.627	0.627
OBP3 M06855_2.00	Arabidopsis thaliana	NHNWHNHHNYWNCTTTTYN	NRAAAAGNWRNDDNDWNDN	Dap-seq OMalley et al.(2016) OBP3_colamp_a	0.627	0.627
DOF1.5 M01938_2.00	Arabidopsis thaliana	ACKTTWWH	DWWAAMGT	PBM Weirauch et al.(2014) pTH7676	0.610	0.610
PK16340.1 M01220_2.00	Cannabis sativa	CKTTWNN	NNWAAMG	PBM Lambert et al.(2019) pTH10129	0.610	0.610
PK23009.1 M01223_2.00	Cannabis sativa	NNHVCTTTWN	NWAAAGBDNN	PBM Lambert et al.(2019) pTH10279	0.610	0.610
DOF1.5 M06829_2.00	Arabidopsis thaliana	HWTDYMCTTTTTNHHHBHHNN	NNDDVDDDNAAAAAGKRHAWD	Dap-seq OMalley et al.(2016) COG1_col_a	0.610	0.610
DOF1.5 M06830_2.00	Arabidopsis thaliana	NHWWTDYACTTTTTN	NAAAAAGTRHAWWDN	Dap-seq OMalley et al.(2016) COG1_colamp_a	0.610	0.610
Dof2 M02674_2.00	Zea mays	NGCTTT	AAAGCN	SELEX Mathelier et al.(2014) MA0020.1	0.610	0.610
MNB1A M02677_2.00	Zea mays	DCTTT	AAAGH	SELEX Mathelier et al.(2014) MA0053.1	0.610	0.610
MNB1A M10440_2.00	Zea mays	NNDCTTTWNNN	NNNWAAAGHNN	Transfac Matys et al.(2006) P$DOF1_01	0.610	0.610
Dof2 M10436_2.00	Zea mays	NNDCTTTWNND	HNNWAAAGHNN	Transfac Matys et al.(2006) P$DOF2_01	0.610	0.610
Dof2 M10437_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DOF_Q2	0.610	0.610
estExt_fgenesh1_pg.C_370003 M01954_2.00	Physcomitrella patens	NNNNHDNNNN	NNNNHDNNNN	PBM Weirauch et al.(2014) pTH8469	0.593	0.593
gw1.385.26.1 M01956_2.00	Physcomitrella patens	NNNCKTTWNN	NNWAAMGNNN	PBM Weirauch et al.(2014) pTH8458	0.593	0.593
CDF5 M06837_2.00	Arabidopsis thaliana	HHWKYDCTTTTHHYTTTHYHYYWHNHH	DDNDWRRDRDAAARDDAAAAGHRMWDD	Dap-seq OMalley et al.(2016) AT1G69570_col_a	0.593	0.593
CDF5 M06838_2.00	Arabidopsis thaliana	YVCTTTTNNYTTWHHHBHBNN	NNVDVDDDWAARNNAAAAGBR	Dap-seq OMalley et al.(2016) AT1G69570_colamp_a	0.593	0.593
DOF1.6 M06831_2.00	Arabidopsis thaliana	HYACTTTWNNN	NNNWAAAGTRD	Dap-seq OMalley et al.(2016) AT1G47655_col_a	0.576	0.576
DOF1.6 M06832_2.00	Arabidopsis thaliana	YYYTTDNCTTTWYBN	NVRWAAAGNHAARRR	Dap-seq OMalley et al.(2016) AT1G47655_colamp_a	0.576	0.576
CDF3 M01944_2.00	Arabidopsis thaliana	NHVCTTTWN	NWAAAGBDN	PBM Weirauch et al.(2014) pTH7659	0.559	0.559
CDF2 M01946_2.00	Arabidopsis thaliana	NHVCTTTWHN	NDWAAAGBDN	PBM Weirauch et al.(2014) pTH7574	0.559	0.559
e_gw1.149.93.1 M01951_2.00	Physcomitrella patens	NCDTTNNN	NNNAAHGN	PBM Weirauch et al.(2014) pTH8463	0.559	0.559
e_gw1.392.16.1 M01953_2.00	Physcomitrella patens	NNCTTTWNN	NNWAAAGNN	PBM Weirauch et al.(2014) pTH8686	0.559	0.559
CDF3 M06849_2.00	Arabidopsis thaliana	HWTDYMCTTTTTNNHHHHW	WDDDDNNAAAAAGKRHAWD	Dap-seq OMalley et al.(2016) CDF3_col_a	0.559	0.559
CDF3 M06850_2.00	Arabidopsis thaliana	DDYRCTTTTHNNHYTTTN	NAAARDNNDAAAAGYRHH	Dap-seq OMalley et al.(2016) CDF3_colamp_a	0.559	0.559
fgenesh1_pg.C_Chr_08.0001000114 M01957_2.00	Ostreococcus tauri	NCKWWNNN	NNNWWMGN	PBM Weirauch et al.(2014) pTH9431	0.508	0.508
For this family, TFs with SR scores > 0.508* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Carubv10019341m	Dof	20	78	PPHRVCPRCHSDNTKFCYFNNYRKSQPRYNCKNCRRHWTHGGALRNVPIGGGSRKIKKA

Links
Other Dof family TFs
Other *Capsella rubella* TFs

1939 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ACRE_067850	Acremonium chrysogenum	ACRE_067850	I	0.000
BBA_09189	Beauveria bassiana	BBA_09189	I	0.000
BGHDH14_bgh05094	Blumeria graminis	BGHDH14_bgh05094	I	0.000
CHGG_07364	Chaetomium globosum	CHGG_07364	I	0.000
CTHT_0068480	Chaetomium thermophilum	CTHT_0068480	I	0.000
CPUR_08028	Claviceps purpurea	CPUR_08028	I	0.000
CFIO01_10198	Colletotrichum fioriniae	CFIO01_10198	I	0.000
GLRG_01145	Colletotrichum graminicola	GLRG_01145	I	0.000
CH063_08735	Colletotrichum higginsianum	CH063_08735	I	0.000
CSUB01_05898	Colletotrichum sublineola	CSUB01_05898	I	0.000
CCM_09080	Cordyceps militaris	CCM_09080	I	0.000
estExt_Genewise1Plus.C_13371	Cryphonectria parasitica	estExt_Genewise1Plus.C_13371	I	0.000
EV44_g6268	Erysiphe necator	EV44_g6268	I	0.000
UCREL1_10245	Eutypa lata	UCREL1_10245	I	0.000
NechaG22260	Fusarium solani	NechaG22260	I	0.000
GGTG_06006	Gaeumannomyces graminis	GGTG_06006	I	0.000
CMQ_7699	Grosmannia clavigera	CMQ_7699	I	0.000
MGG_05343	Magnaporthe oryzae	MGG_05343	I	0.000
MAPG_04263	Magnaporthe poae	MAPG_04263	I	0.000
MBM_09456	Marssonina brunnea	MBM_09456	I	0.000
MAC_05572	Metarhizium acridum	MAC_05572	I	0.000
MAM_04875	Metarhizium album	MAM_04875	I	0.000
MANI_011912	Metarhizium anisopliae	MANI_011912	I	0.000
MBR_05015	Metarhizium brunneum	MBR_05015	I	0.000
MGU_01655	Metarhizium guizhouense	MGU_01655	I	0.000
MAJ_06898	Metarhizium majus	MAJ_06898	I	0.000
X797_001512	Metarhizium robertsii	X797_001512	I	0.000
MYCTH_2301920	Myceliophthora thermophila	MYCTH_2301920	I	0.000
gw1.14.468.1	Nectria haematococca	gw1.14.468.1	I	0.000
col-26	Neurospora crassa	NCU07788	D	0.000
estExt_Genewise1Plus.C_140234	Neurospora discreta	estExt_Genewise1Plus.C_140234	I	0.000
NEUTE1DRAFT_59081	Neurospora tetrasperma	NEUTE1DRAFT_59081	I	0.000
OIDMADRAFT_45538	Oidiodendron maius	OIDMADRAFT_45538	I	0.000
OCS_01944	Ophiocordyceps sinensis	OCS_01944	I	0.000
F503_04220	Ophiostoma piceae uamh	F503_04220	I	0.000
PFICI_10998	Pestalotiopsis fici	PFICI_10998	I	0.000
PODANS_2_4060	Podospora anserina	PODANS_2_4060	I	0.000
GMDG_01905	Pseudogymnoascus destructans	GMDG_01905	I	0.000
V499_05963	Pseudogymnoascus pannorum	V499_05963	I	0.000
SAPIO_CDS0393	Scedosporium apiospermum	SAPIO_CDS0393	I	0.000
SBOR_6099	Sclerotinia borealis	SBOR_6099	I	0.000
SMAC_08231	Sordaria macrospora	SMAC_08231	I	0.000
S40288_10011	Stachybotrys chartarum	S40288_10011	N	0.000
S40288_01569	Stachybotrys chartarum	S40288_01569	I	0.000
S40285_00097	Stachybotrys chlorohalonata	S40285_00097	I	0.000
THITE_2108095	Thielavia terrestris	THITE_2108095	I	0.000
VHEMI08540	Torrubiella hemipterigena	VHEMI08540	I	0.000
TRIATDRAFT_11573	Trichoderma atroviride	TRIATDRAFT_11573	I	0.000
TRIREDRAFT_52368	Trichoderma reesei	TRIREDRAFT_52368	I	0.000
TRIVIDRAFT_156582	Trichoderma virens	TRIVIDRAFT_156582	I	0.000
UV8b_5300	Ustilaginoidea virens	UV8b_5300	I	0.000
VDBG_09402	Verticillium albo atrum	VDBG_09402	I	0.000
VDBG_09402	Verticillium alfalfae	VDBG_09402	I	0.000
VDAG_04640	Verticillium dahliae	VDAG_04640	I	0.000

Carubv10019341m.g (Capsella rubella) Dof

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1939 Related TFs

Carubv10019341m.g **(Capsella rubella)
Dof**