CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

SELMODRAFT_445661 *(Selaginella moellendorffii)* E2F
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF02319 (E2F_TDP)	IPR003316	SELMODRAFT_445661	T173465_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
estExt_gwp_gw1.C_220046 M01225_2.00	Physcomitrella patens	VGCGCBHHNN	NNDDVGCGCB	PBM Lambert et al.(2019) pTH9809	0.954	0.954
e_gw1.38.2.1 M01968_2.00	Physcomitrella patens	NSGCGCBHHN	NDDVGCGCSN	PBM Weirauch et al.(2014) pTH5707	0.938	0.938
E2FA M06871_2.00	Arabidopsis thaliana	NDDDGGCGCCAWWW	WWWTGGCGCCHHHN	Dap-seq OMalley et al.(2016) E2FA_col_a	0.831	0.831
E2FA M06872_2.00	Arabidopsis thaliana	DDWDGGCGCCAWAD	HTWTGGCGCCHWHH	Dap-seq OMalley et al.(2016) E2FA_colamp_a	0.831	0.831
E2FA M08106_2.00	Arabidopsis thaliana	NVGCGCCAHN	NDTGGCGCBN	ChIP-seq Mathelier et al.(2014) MA1414.1	0.831	0.831
E2FC M06870_2.00	Arabidopsis thaliana	AWDDDGGCGCCAAAR	YTTTGGCGCCHHHWT	Dap-seq OMalley et al.(2016) E2FC_col_a	0.800	0.800
E2F2 M01961_2.00	Homo sapiens	DNSGCGCSNH	DNSGCGCSNH	PBM Weirauch et al.(2014) pTH9195	0.754	0.754
E2f2 M00154_2.00	Mus musculus	NDNNGCGSBN	NVSCGCNNHN	PBM Badis et al.(2009) E2F2_1022	0.754	0.754
E2F2 M01963_2.00	Tupaia belangeri	WDVGCGCBHW	WDVGCGCBHW	PBM Weirauch et al.(2014) pTH9291	0.754	0.754
E2F3 M01964_2.00	Taeniopygia guttata	NNSGCGCGMN	NKCGCGCSNN	PBM Weirauch et al.(2014) pTH9288	0.754	0.754
E2F2 M02949_2.00	Homo sapiens	AAAAATGGCGCCAAAAWD	HWTTTTGGCGCCATTTTT	SELEX Jolma et al.(2013) E2F2_1	0.754	0.754
E2F2 M02950_2.00	Homo sapiens	VDTTTTGGCGCCAAAAHN	NDTTTTGGCGCCAAAAHB	SELEX Jolma et al.(2013) E2F2_2	0.754	0.754
E2F2 M02951_2.00	Homo sapiens	AAAWWGGCGCCAWTTT	AAAWTGGCGCCWWTTT	SELEX Jolma et al.(2013) E2F2_3	0.754	0.754
E2F4 M02961_2.00	Homo sapiens	AATGGCGCCAAA	TTTGGCGCCATT	SELEX Jolma et al.(2013) E2F4_1	0.754	0.754
E2F4 M02962_2.00	Homo sapiens	TTTGGCGCCAAA	TTTGGCGCCAAA	SELEX Jolma et al.(2013) E2F4_2	0.754	0.754
E2F4 M04707_2.00	Homo sapiens	NWWKGGCGCCAAAW	WTTTGGCGCCMWWN	SELEX Yin et al.(2017) E2F4_eDBD_HT-SELEX	0.754	0.754
E2F2 M04696_2.00	Homo sapiens	GCGCGCGCSYW	WRSGCGCGCGC	SELEX Yin et al.(2017) E2F2_eDBD_HT-SELEX_1	0.754	0.754
E2F2 M04697_2.00	Homo sapiens	NDWWDGGCGCCWWHWN	NWDWWGGCGCCHWWHN	SELEX Yin et al.(2017) E2F2_eDBD_HT-SELEX_2	0.754	0.754
E2F4 M08109_2.00	Homo sapiens	NSGCGGGARVN	NBYTCCCGCSN	ChIP-seq Mathelier et al.(2014) MA0470.1	0.754	0.754
E2F4 M07942_2.00	Homo sapiens	SGCGSGARDNNBNVN	NBNVNNHYTCSCGCS	ChIP-seq Gerstein et al.(2012) HeLa-S3_E2F4_UCD	0.754	0.754
E2F4 M07943_2.00	Homo sapiens	SGCGGGARDNNBVVN	NBBVNNHYTCCCGCS	ChIP-seq Gerstein et al.(2012) K562b_E2F4_UCD	0.754	0.754
E2F2 M09029_2.00	Homo sapiens	GGCGCGMAWC	GWTKCGCGCC	Misc Kulakovskiy et al.(2013) E2F2_HUMAN.H11MO.0.B	0.754	0.754
E2F4 M09036_2.00	Homo sapiens	VDRGGCGGGRVND	HNBYCCCGCCYHB	Misc Kulakovskiy et al.(2013) E2F4_HUMAN.H11MO.0.A	0.754	0.754
E2f2 M09039_2.00	Mus musculus	GGCGCGMAWC	GWTKCGCGCC	Misc Kulakovskiy et al.(2013) E2F2_MOUSE.H11MO.0.B	0.754	0.754
E2f4 M09037_2.00	Mus musculus	NRDDGGCGGGRMNN	NNKYCCCGCCHHYN	Misc Kulakovskiy et al.(2013) E2F4_MOUSE.H11MO.0.A	0.754	0.754
E2F4 M09524_2.00	Homo sapiens	VGCGSGAADH	DHTTCSCGCB	Misc Heinz et al.(2010) K562-E2F4_GSE31477	0.754	0.754
E2F4 M10457_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$E2F4_05	0.754	0.754
E2F4 M10458_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$E2F4_Q3	0.754	0.754
E2F4 M10459_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$E2F4_Q6	0.754	0.754
E2F2 M04698_2.00	Homo sapiens	SGBGSGCGCGS	SCGCGCSCVCS	SELEX Yin et al.(2017) E2F2_eDBD_Methyl-HT-SELEX_1	0.754	0.754
E2F2 M04699_2.00	Homo sapiens	DWWWDGGCGCCAAAWH	DWTTTGGCGCCHWWWH	SELEX Yin et al.(2017) E2F2_eDBD_Methyl-HT-SELEX_2	0.754	0.754
ENSACAG00000013716 M01960_2.00	Anolis carolinensis	HNVGCGCBND	HNVGCGCBND	PBM Weirauch et al.(2014) pTH9221	0.738	0.738
E2f3 M00153_2.00	Mus musculus	NNNNGCGSNN	NNSCGCNNNN	PBM Badis et al.(2009) E2F3_3752	0.738	0.738
ENSOANG00000014967 M01962_2.00	Ornithorhynchus anatinus	NDSGCGCSHN	NDSGCGCSHN	PBM Weirauch et al.(2014) pTH9382	0.738	0.738
E2F3 M02956_2.00	Homo sapiens	RAAAAKGGCGCCAAAANN	NNTTTTGGCGCCMTTTTY	SELEX Jolma et al.(2013) E2F3_1	0.738	0.738
E2F3 M02957_2.00	Homo sapiens	DAAAADGGCGCCMWWTTY	RAAWWKGGCGCCHTTTTH	SELEX Jolma et al.(2013) E2F3_2	0.738	0.738
E2F3 M02958_2.00	Homo sapiens	NDTTTTGGCGCCAAAABH	DVTTTTGGCGCCAAAAHN	SELEX Jolma et al.(2013) E2F3_3	0.738	0.738
E2F3 M04701_2.00	Homo sapiens	DWTTTGGCGCCAAAWH	DWTTTGGCGCCAAAWH	SELEX Yin et al.(2017) E2F3_eDBD_HT-SELEX	0.738	0.738
E2F3 M09031_2.00	Homo sapiens	NDGGCGGGAAR	YTTCCCGCCHN	Misc Kulakovskiy et al.(2013) E2F3_HUMAN.H11MO.0.A	0.738	0.738
E2f3 M09038_2.00	Mus musculus	DSGCGGGARV	BYTCCCGCSH	Misc Kulakovskiy et al.(2013) E2F3_MOUSE.H11MO.0.A	0.738	0.738
E2f5 M09042_2.00	Mus musculus	NGCGCSAAAN	NTTTSGCGCN	Misc Kulakovskiy et al.(2013) E2F5_MOUSE.H11MO.0.B	0.738	0.738
E2F3 M10454_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$E2F1_Q6_01	0.738	0.738
E2F3 M10455_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$E2F3_Q6	0.738	0.738
E2F3 M04702_2.00	Homo sapiens	DTTTTGGCGCCAAAAH	DTTTTGGCGCCAAAAH	SELEX Yin et al.(2017) E2F3_eDBD_Methyl-HT-SELEX	0.738	0.738
efl-1 M08110_2.00	Caenorhabditis elegans	HNHNSGCGSSAAWWN	NWWTTSSCGCSNDND	ChIP-seq Mathelier et al.(2014) MA0541.1	0.677	0.677
efl-1 M08197_2.00	Caenorhabditis elegans	BGCGSSAAWW	WWTTSSCGCV	ChIP-seq Contrino et al.(2012) Mw140	0.677	0.677
efl-1 M09526_2.00	Caenorhabditis elegans	WGCAARYGCGCTCYA	TRGAGCGCRYTTGCW	Misc Heinz et al.(2010) cElegans-L1-EFL1_modEncode	0.677	0.677
E2F1 M02952_2.00	Homo sapiens	WWDGGCGCCAAW	WTTGGCGCCHWW	SELEX Jolma et al.(2013) E2F1_1	0.646	0.646
E2F1 M02953_2.00	Homo sapiens	WWKGGCGCCWWW	WWWGGCGCCMWW	SELEX Jolma et al.(2013) E2F1_2	0.646	0.646
E2F1 M02954_2.00	Homo sapiens	WWWKGGCGCCMWWW	WWWKGGCGCCMWWW	SELEX Jolma et al.(2013) E2F1_3	0.646	0.646
E2F1 M02955_2.00	Homo sapiens	AAWKGGCGCCAWTW	WAWTGGCGCCMWTT	SELEX Jolma et al.(2013) E2F1_4	0.646	0.646
E2F1 M04700_2.00	Homo sapiens	NWWWDGGCGCCAAAWH	DWTTTGGCGCCHWWWN	SELEX Yin et al.(2017) E2F1_FL_HT-SELEX	0.646	0.646
E2F1 M07938_2.00	Homo sapiens	VRRVNRVGCGSGMDS	SHKCSCGCBYNBYYB	ChIP-seq Gerstein et al.(2012) HeLa-S3_E2F1_UCD	0.646	0.646
E2f M08196_2.00	Drosophila melanogaster	AAWWBSSCGSCAA	TTGSCGSSVWWTT	ChIP-seq Contrino et al.(2012) Mf10	0.646	0.646
E2F1 M09030_2.00	Homo sapiens	NVNDGGCGGGARVN	NBYTCCCGCCHNBN	Misc Kulakovskiy et al.(2013) E2F1_HUMAN.H11MO.0.A	0.646	0.646
E2f1 M09041_2.00	Mus musculus	NDDGGCGGGRVN	NBYCCCGCCHHN	Misc Kulakovskiy et al.(2013) E2F1_MOUSE.H11MO.0.A	0.646	0.646
E2F1 M09521_2.00	Homo sapiens	NNGGCGGGAA	TTCCCGCCNN	Misc Heinz et al.(2010) Hela-E2F1_GSE22478	0.646	0.646
E2F1 M10444_2.00	Homo sapiens	THVGCGCGAAAAHKR	YMDTTTTCGCGCBDA	Transfac Matys et al.(2006) V$E2F_01	0.646	0.646
E2F1 M10445_2.00	Homo sapiens	BHKSGCGCSAAA	TTTSGCGCSMDV	Transfac Matys et al.(2006) V$E2F_03	0.646	0.646
E2F1 M10446_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$E2F1_01	0.646	0.646
E2F1 M10447_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$E2F1_02	0.646	0.646
E2F1 M10448_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$E2F1_Q3_01	0.646	0.646
E2F1 M10449_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$E2F1_Q3	0.646	0.646
E2F1 M10450_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$E2F1_Q4_01	0.646	0.646
E2F1 M10451_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$E2F1_Q4_02	0.646	0.646
E2F1 M10452_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$E2F1_Q4	0.646	0.646
E2F1 M10453_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$E2F1_Q6	0.646	0.646
GSPATT00020286001 M01965_2.00	Paramecium tetraurelia	NNSGCGSBN	NVSCGCSNN	PBM Weirauch et al.(2014) pTH5647	0.631	0.631
E2F6 M08107_2.00	Homo sapiens	DGGMGGGARVN	NBYTCCCKCCH	ChIP-seq Mathelier et al.(2014) MA0471.1	0.600	0.600
E2F6 M07939_2.00	Homo sapiens	NDSGCGGGARV	BYTCCCGCSHN	ChIP-seq Gerstein et al.(2012) HeLa-S3_E2F6_UCD	0.600	0.600
E2F6 M07940_2.00	Homo sapiens	NDVGCGGGARV	BYTCCCGCBHN	ChIP-seq Gerstein et al.(2012) K562b_E2F6_UCD	0.600	0.600
E2F6 M07941_2.00	Homo sapiens	NDSGCGGGARV	BYTCCCGCSHN	ChIP-seq Gerstein et al.(2012) K562_E2F6_HudsonAlpha	0.600	0.600
E2F6 M09034_2.00	Homo sapiens	NRGGMGGGARRNN	NNYYTCCCKCCYN	Misc Kulakovskiy et al.(2013) E2F6_HUMAN.H11MO.0.A	0.600	0.600
E2f6 M09043_2.00	Mus musculus	NDGGCGGGARVV	BBYTCCCGCCHN	Misc Kulakovskiy et al.(2013) E2F6_MOUSE.H11MO.0.A	0.600	0.600
E2F6 M09523_2.00	Homo sapiens	VGCGGGARNN	NNYTCCCGCB	Misc Heinz et al.(2010) Hela-E2F6_GSE31477	0.600	0.600
E2F6 M10456_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$E2F6_01	0.600	0.600
E2F M01959_2.00	Dictyostelium discoideum	NNGSGCGCSHN	NDSGCGCSCNN	PBM Weirauch et al.(2014) pTH5403	0.585	0.585
estExt_gwp_GeneWisePlus.C_Chr_02.00010270 M01969_2.00	Ostreococcus tauri	HRVGCGCCNN	NNGGCGCBYD	PBM Weirauch et al.(2014) pTH5701	0.538	0.538
efl-2 M01966_2.00	Caenorhabditis elegans	NDBGCGSBNN	NNVSCGCVHN	PBM Weirauch et al.(2014) pTH5916	0.492	0.492
efl-2 M00662_2.00	Caenorhabditis elegans	NSGCGSNNDN	NHNNSCGCSN	PBM Narasimhan et al.(2015) pTH9173	0.492	0.492
For this family, TFs with SR scores > 0.429* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
EFJ15185	E2F	40	104	YDSSLGLLTKKFINLIDQAEDGVLDLNNAADTLHVQKRRIYDITNVLEGIGLIEKKLKNRIRWKG

Links
Other E2F family TFs
Other *Selaginella moellendorffii* TFs

1046 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ENSAMEG00000000192	Ailuropoda melanoleuca	ENSAMEG00000000192	I	0.000
Alligator_sinensis_CCG006744.1	Alligator sinensis	Alligator_sinensis_CCG006744.1	I	0.000
ENSAPLG00000006384	Anas platyrhynchos	ENSAPLG00000006384	I	0.000
LCORL	Anolis carolinensis	ENSACAG00000002012	I	0.000
Afo_R006360	Aptenodytes forsteri	Afo_R006360	I	0.000
ENSP00000371661-D1	Bos grunniens	ENSP00000371661-D1	I	0.000
LCORL	Bos taurus	ENSBTAG00000046561	I	0.000
Brh_R013202	Buceros rhinoceros	Brh_R013202	I	0.000
LCORL	Callithrix jacchus	ENSCJAG00000012800	I	0.000
Aan_R007397	Calypte anna	Aan_R007397	I	0.000
LCORL	Canis familiaris	ENSCAFG00000016672	I	0.000
ENSCPOG00000003269	Cavia porcellus	ENSCPOG00000003269	I	0.000
ENSCSAG00000016522	Chlorocebus sabaeus	ENSCSAG00000016522	I	0.000
lcorl	Danio rerio	ENSDARG00000070098	I	0.000
LCORL	Dasypus novemcinctus	ENSDNOG00000001545	I	0.000
ENSDORG00000003797	Dipodomys ordii	ENSDORG00000003797	I	0.000
LCORL	Equus caballus	ENSECAG00000000648	I	0.000
LCORL	Erinaceus europaeus	ENSEEUG00000000419	I	0.000
LCORL	Felis catus	ENSFCAG00000029474	I	0.000
ENSFALG00000009227	Ficedula albicollis	ENSFALG00000009227	I	0.000
LCORL	Gallus gallus	ENSGALG00000014421	I	0.000
Gfo_R010322	Geospiza fortis	Gfo_R010322	I	0.000
LCORL	Gorilla gorilla	ENSGGOG00000014894	I	0.000
LCORL	Homo sapiens	ENSG00000178177	D	0.000
ENSSTOG00000000960	Ictidomys tridecemlineatus	ENSSTOG00000000960	I	0.000
ENSLACG00000017771	Latimeria chalumnae	ENSLACG00000017771	I	0.000
LCORL	Loxodonta africana	ENSLAFG00000009691	I	0.000
ENSP00000371661	Macaca fascicularis	ENSP00000371661	I	0.000
LCORL	Meleagris gallopavo	ENSMGAG00000012554	I	0.000
ENSMICG00000008878	Microcebus murinus	ENSMICG00000008878	I	0.000
LCORL	Monodelphis domestica	ENSMODG00000000757	I	0.000
ENSMPUG00000002301	Mustela putorius furo	ENSMPUG00000002301	I	0.000
Lcorl	Mus musculus	ENSMUSG00000015882	I	0.000
Myotis_brandtii_LCORL_10024397	Myotis brandtii	Myotis_brandtii_LCORL_10024397	I	0.000
LCORL	Myotis lucifugus	ENSMLUG00000013781	I	0.000
ENSNLEG00000016679	Nomascus leucogenys	ENSNLEG00000016679	I	0.000
Ogr00836	Ophisaurus gracilis	Ogr00836	I	0.000
LCORL	Oryctolagus cuniculus	ENSOCUG00000006802	I	0.000
LCORL	Otolemur garnettii	ENSOGAG00000005593	I	0.000
ENSOARG00000004333	Ovis aries	ENSOARG00000004333	I	0.000
LCORL	Pan troglodytes	ENSPTRG00000015943	I	0.000
ENSPANG00000024022	Papio anubis	ENSPANG00000024022	I	0.000
Pvit_18026	Pogona vitticeps	Pvit_18026	I	0.000
LCORL	Procavia capensis	ENSPCAG00000007105	I	0.000
LCORL	Pteropus vampyrus	ENSPVAG00000013601	I	0.000
ENSSHAG00000015746	Sarcophilus harrisii	ENSSHAG00000015746	I	0.000
LCORL	Sus scrofa	ENSSSCG00000008748	I	0.000
LCORL	Taeniopygia guttata	ENSTGUG00000009625	I	0.000
ENSTSYG00000014055	Tarsius syrichta	ENSTSYG00000014055	I	0.000
LCORL	Tursiops truncatus	ENSTTRG00000016951	I	0.000
Tal_R001804	Tyto alba	Tal_R001804	I	0.000
LCORL	Vicugna pacos	ENSVPAG00000010356	I	0.000

SELMODRAFT_445661 (Selaginella moellendorffii) E2F

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1046 Related TFs

SELMODRAFT_445661 **(Selaginella moellendorffii)
E2F**