cassava23535.valid.m1 (Manihot esculenta)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02319 (E2F_TDP) IPR003316 cassava23535.valid.m1 T173799_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TFDP1
M08108_2.00 		Homo sapiens
NSGCGGGAAVN
NBTTCCCGCSN		 ChIP-seq
Mathelier et al.(2014)
MA1122.1 		0.794 0.794
TFDP1
M09035_2.00 		Homo sapiens
VRDDGGCGGGAMDN
NHKTCCCGCCHHYB		 Misc
Kulakovskiy et al.(2013)
TFDP1_HUMAN.H11MO.0.C 		0.794 0.794
dpl-1
M09525_2.00 		Caenorhabditis elegans
GCGCGYHW
WDRCGCGC		 Misc
Heinz et al.(2010)
cElegans-Adult_modEncode 		0.721 0.721
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava23535.valid.m1 E2F 102 185

Links

Other E2F family TFs
Other Manihot esculenta TFs

592 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_07305 Aegilops tauschii F775_07305 N
F775_10961 Aegilops tauschii F775_10961 N
ANCCAN_27026 Ancylostoma caninum ANCCAN_27026 N
ANCCAN_23849 Ancylostoma caninum ANCCAN_23849 N
ANCCEY_10891 Ancylostoma ceylanicum ANCCEY_10891 N
ACAC_0000093601 Angiostrongylus cantonensis ACAC_0000093601 N
ACOC_0000334101 Angiostrongylus costaricensis ACOC_0000334101 N
ASIM_0001450801 Anisakis simplex ASIM_0001450801 N
ASIM_0000060401 Anisakis simplex ASIM_0000060401 N
ACHR008505 Anopheles christyi ACHR008505 N
ACUA020431 Anopheles culicifacies ACUA020431 N
AEPI010384 Anopheles epiroticus AEPI010384 N
AEPI010666 Anopheles epiroticus AEPI010666 N
AQUA015309 Anopheles quadriannulatus AQUA015309 N
BGLB006778 Biomphalaria glabrata BGLB006778 N
BRADI2G50510 Brachypodium distachyon BRADI2G50510 N
BRADI3G23370 Brachypodium distachyon BRADI3G23370 N
e_gw.11.656.1 Branchiostoma floridae e_gw.11.656.1 N
Bo1g131210 Brassica oleracea Bo1g131210 N
Carubv10007218m.g Capsella rubella Carubv10007218m.g N
Ca_19697 Cicer arietinum Ca_19697 N
Ca_08015 Cicer arietinum Ca_08015 N
csin109617 Clonorchis sinensis csin109617 N
YQE_10731 Dendroctonus ponderosae YQE_10731 N
GI23625 Drosophila mojavensis FBgn0146351 N
gene23926-v1.0-hybrid Fragaria vesca gene23926-v1.0-hybrid N
GLYMA08G09430 Glycine max GLYMA08G09430 N
Gorai.003G184900 Gossypium raimondii Gorai.003G184900 I
LOAG_18696 Loa loa LOAG_18696 N
LjT36I04.40.nd Lotus japonicus LjT36I04.40.nd N
VAX1 Loxodonta africana ENSLAFG00000018107 N
MDP0000690933 Malus domestica MDP0000690933 N
cassava13400.valid.m1 Manihot esculenta cassava13400.valid.m1 N
maker-nMf.1.1.scaf28435-augustus-gene-0.3 Meloidogyne floridensis maker-nMf.1.1.scaf28435-augustus-gene-0.3 N
augustus_masked-nMf.1.1.scaf10580-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf10580-processed-gene-0.0 N
Minc02159 Meloidogyne incognita Minc02159 N
mgf006959m Mimulus guttatus mgf006959m N
GSMUA_Achr3G23090_001 Musa acuminata GSMUA_Achr3G23090_001 N
NECAME_08983 Necator americanus NECAME_08983 N
Ocbimv22024994m.g Octopus bimaculoides Ocbimv22024994m.g N
nOo.2.0.1.g12002 Onchocerca ochengi nOo.2.0.1.g12002 N
T265_10172 Opisthorchis viverrini T265_10172 N
ENSOCUG00000013528 Oryctolagus cuniculus ENSOCUG00000013528 I
OLONG_008306 Oryza longistaminata OLONG_008306 N
OLONG_012459 Oryza longistaminata OLONG_012459 N
OLONG_017944 Oryza longistaminata OLONG_017944 N
OMERI08G08060 Oryza meridionalis OMERI08G08060 N
OS01G0788800 Oryza sativa OS01G0788800 N
Pavir.Fa02028 Panicum virgatum Pavir.Fa02028 N
ENSPTRG00000017522 Pan troglodytes ENSPTRG00000017522 N
PDK_20s1347391g002 Phoenix dactylifera PDK_20s1347391g002 N
PDK_20s1410161g001 Phoenix dactylifera PDK_20s1410161g001 N
POPTR_0012s03550 Populus trichocarpa POPTR_0012s03550 N
scaffold61-EXSNAP2012.75 Pristionchus exspectatus scaffold61-EXSNAP2012.75 N
nRc.2.0.1.g21365 Romanomermis culicivorax nRc.2.0.1.g21365 N
SMTD_0001030501 Schistosoma mattheei SMTD_0001030501 N
PGSC0003DMG400007775 Solanum tuberosum PGSC0003DMG400007775 N
PGSC0003DMG400019030 Solanum tuberosum PGSC0003DMG400019030 N
PGSC0003DMG400013263 Solanum tuberosum PGSC0003DMG400013263 N
SINV22981 Solenopsis invicta SINV22981 N
TLX3 Taeniopygia guttata ENSTGUG00000014966 N
TCM_016582 Theobroma cacao TCM_016582 I
TRAES3BF096700010CFD_g Triticum aestivum TRAES3BF096700010CFD_g N
Traes_3AL_F42853DA5 Triticum aestivum Traes_3AL_F42853DA5 N
TRAES3BF096700040CFD_g Triticum aestivum TRAES3BF096700040CFD_g N
Traes_2AL_AAEBFA9CC Triticum aestivum Traes_2AL_AAEBFA9CC N
Traes_1DS_AAEBFA9CC Triticum aestivum Traes_1DS_AAEBFA9CC N
Traes_1DL_9FB53E48A Triticum aestivum Traes_1DL_9FB53E48A N
Traes_1AS_CA75913B6 Triticum aestivum Traes_1AS_CA75913B6 N
Traes_6BL_4301B7F15 Triticum aestivum Traes_6BL_4301B7F15 N
Traes_6DL_D722B6E13 Triticum aestivum Traes_6DL_D722B6E13 N
TRIUR3_29318 Triticum urartu TRIUR3_29318 N
TRIUR3_32002 Triticum urartu TRIUR3_32002 N
GRMZM2G004334 Zea mays GRMZM2G004334 N
GRMZM2G123140 Zea mays GRMZM2G123140 I