ebf3a (Gasterosteus aculeatus)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF16422 (COE1_DBD) (none) ENSGACG00000009548 T174556_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
EBF3
M10461_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF_Q6 		0.944 0.944
Ebf1
M09045_2.00 		Mus musculus
DBYCCCWRGGGAV
BTCCCYWGGGRVH		 Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A 		0.909 0.909
Ebf1
M09527_2.00 		Mus musculus
DBTCCCHDGGGA
TCCCHDGGGAVH		 Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978 		0.909 0.909
Ebf1
M10469_2.00 		Mus musculus
VYMHVYYCYYBRGGGAVTHKHB
VDMDABTCCCYVRRGRRBDKRB		 Transfac
Matys et al.(2006)
V$OLF1_01 		0.909 0.909
EBF4
M10460_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_02 		0.879 0.879
Ebf4
M10468_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_01 		0.874 0.874
Ebf2
M10467_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_01 		0.866 0.866
kn
M03721_2.00 		Drosophila melanogaster
BWATTCCCHDGGGAATWV
BWATTCCCHDGGGAATWV		 SELEX
Nitta et al.(2015)
kn_1 		0.740 0.740
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000012611 EBF1 16 246
ENSGACP00000012623 EBF1 16 246

Links

Other EBF1 family TFs
Other Gasterosteus aculeatus TFs

366 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000004106 Astyanax mexicanus ENSAMXG00000004106 N
cers2a Danio rerio ENSDARG00000013704 N
ENSPFOG00000008203 Poecilia formosa ENSPFOG00000008203 N
ENSPFOG00000013108 Poecilia formosa ENSPFOG00000013108 N
ENSPFOG00000019166 Poecilia formosa ENSPFOG00000019166 N
cers4a Takifugu rubripes ENSTRUG00000012847 N
ENSTNIG00000001899 Tetraodon nigroviridis ENSTNIG00000001899 N
cers4a Tetraodon nigroviridis ENSTNIG00000015527 N
cers3b Tetraodon nigroviridis ENSTNIG00000019226 N
ENSXMAG00000003751 Xiphophorus maculatus ENSXMAG00000003751 N