CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSAMXG00000017401 *(Astyanax mexicanus)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00250 (Forkhead)	IPR001766	ENSAMXG00000017401	T185192_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
FOXP1 M00836_2.00	Homo sapiens	NRTMAACANN	NNTGTTKAYN	PBM Gabut et al.(2011) pEX0123	0.789	0.938
FOXP1 M00837_2.00	Homo sapiens	DGTAAACAA	TTGTTTACH	PBM Gabut et al.(2011) pEX0124	0.789	0.938
FOXP1 M01976_2.00	Homo sapiens	RTAAACAA	TTGTTTAY	PBM Weirauch et al.(2014) pTH5656	0.789	0.938
Foxp1 M00793_2.00	Mus musculus	NRTMAAYAN	NTRTTKAYN	PBM Weirauch et al.(2013) pTH3855	0.789	0.938
FOXP1 M04811_2.00	Homo sapiens	NTGTTTRYNRTNNNNNNBNAYRVWMAACAN	NTGTTKWBYRTNVNNNNNNAYNRYAAACAN	SELEX Yin et al.(2017) FOXP1_eDBD_HT-SELEX	0.789	0.938
FOXP1 M08115_2.00	Homo sapiens	NDGTAAACAVNN	NNBTGTTTACHN	ChIP-seq Mathelier et al.(2014) MA0481.2	0.789	0.938
FOXP1 M09086_2.00	Homo sapiens	RKAAACAVM	KBTGTTTMY	Misc Kulakovskiy et al.(2013) FOXP1_HUMAN.H11MO.0.A	0.789	0.938
FOXP1 M09541_2.00	Homo sapiens	NDGTAAACAVNN	NNBTGTTTACHN	Misc Heinz et al.(2010) H9-FOXP1_GSE31006	0.789	0.938
FOXP1 M10536_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXP1_01	0.789	0.938
FOXP1 M04812_2.00	Homo sapiens	NTGTTTRYBRTNNNNNNBNAYRVWMAACAH	DTGTTKWBYRTNVNNNNNNAYVRYAAACAN	SELEX Yin et al.(2017) FOXP1_eDBD_Methyl-HT-SELEX	0.789	0.938
Foxp2 M00792_2.00	Mus musculus	RTAAACAD	HTGTTTAY	PBM Weirauch et al.(2013) pTH1288	0.778	0.914
FOXP2 M05866_2.00	Homo sapiens	RTAAAYAWNN	NNWTRTTTAY	SMiLE-seq Isakova et al.(2017) FOXP2	0.778	0.914
FOXP2 M08116_2.00	Homo sapiens	NDGTAAACAVN	NBTGTTTACHN	ChIP-seq Mathelier et al.(2014) MA0593.1	0.778	0.914
FOXP2 M09089_2.00	Homo sapiens	DGTAAACAV	BTGTTTACH	Misc Kulakovskiy et al.(2013) FOXP2_HUMAN.H11MO.0.C	0.778	0.914
Foxp2 M09101_2.00	Mus musculus	NGTAAACAN	NTGTTTACN	Misc Kulakovskiy et al.(2013) FOXP2_MOUSE.H11MO.0.A	0.778	0.914
FoxP M03753_2.00	Drosophila melanogaster	AAACAACAACAA	TTGTTGTTGTTT	SELEX Nitta et al.(2015) CG16899_1	0.763	0.778
FoxP M06201_2.00	Drosophila melanogaster	VRTAAACAA	TTGTTTAYB	B1H Zhu et al.(2011) CG16899_SANGER_5_FBgn0037735	0.763	0.778
FoxP M06202_2.00	Drosophila melanogaster	VNNVBBAAAAAAAD	HTTTTTTTVVBNNB	B1H Zhu et al.(2011) CG2052_SANGER_2.5_FBgn0039905	0.763	0.778
FoxP M06203_2.00	Drosophila melanogaster	NNNNNRAAAAAAWNN	NNWTTTTTTYNNNNN	B1H Zhu et al.(2011) CG2052_SOLEXA_2.5_FBgn0039905	0.763	0.778
FOXK2 M08118_2.00	Homo sapiens	NNRTAAACANN	NNTGTTTAYNN	ChIP-seq Mathelier et al.(2014) MA1103.1	0.692	0.457
FOXC1 M00259_2.00	Homo sapiens	RTAAACAW	WTGTTTAY	PBM Barrera et al.(2016) FOXC1_S82T	0.687	0.457
FOXC1 M00257_2.00	Homo sapiens	NNNVHHAAYA	TRTTDDBNNN	PBM Barrera et al.(2016) FOXC1_REF	0.687	0.444
Foxc1 M01982_2.00	Mus musculus	HNNRHMAAYA	TRTTKDYNND	PBM Weirauch et al.(2014) pTH2673	0.687	0.444
FOXC1 M03013_2.00	Homo sapiens	AWRTAAAYAAAYA	TRTTTRTTTAYWT	SELEX Jolma et al.(2013) FOXC1_1	0.687	0.444
FOXC1 M03014_2.00	Homo sapiens	NRWMAATATTKWYN	NRWMAATATTKWYN	SELEX Jolma et al.(2013) FOXC1_2	0.687	0.444
FOXC1 M03015_2.00	Homo sapiens	WRWRTMAAYAW	WTRTTKAYWYW	SELEX Jolma et al.(2013) FOXC1_3	0.687	0.444
Foxc1 M03059_2.00	Mus musculus	RTAAAYAAACA	TGTTTRTTTAY	SELEX Jolma et al.(2013) Foxc1_1	0.687	0.444
Foxc1 M03060_2.00	Mus musculus	RTAAACA	TGTTTAY	SELEX Jolma et al.(2013) Foxc1_2	0.687	0.444
FOXC1 M09083_2.00	Homo sapiens	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_HUMAN.H11MO.0.C	0.687	0.444
Foxc1 M09111_2.00	Mus musculus	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_MOUSE.H11MO.0.C	0.687	0.444
FOXC1 M10525_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXC1_Q4	0.687	0.444
FOXC1 M10526_2.00	Homo sapiens	TSTTTATTTACDBNVN	NBNVHGTAAATAAASA	Transfac Matys et al.(2006) V$FREAC3_01	0.687	0.444
FOXC1 M00253_2.00	Homo sapiens	NNHATAAWHAN	NTDWTTATDNN	PBM Barrera et al.(2016) FOXC1_F112S	0.687	0.432
FOXC1 M00255_2.00	Homo sapiens	NRTATATWHNNN	NNNDWATATAYN	PBM Barrera et al.(2016) FOXC1_L130F	0.687	0.432
FOXC1 M00256_2.00	Homo sapiens	NNNNWWTYAMAWN	NWTKTRAWWNNNN	PBM Barrera et al.(2016) FOXC1_P79L	0.687	0.432
FOXC1 M00258_2.00	Homo sapiens	NNNAMAAYANN	NNTRTTKTNNN	PBM Barrera et al.(2016) FOXC1_S131L	0.687	0.432
FOXC1 M00254_2.00	Homo sapiens	RRTAAACANN	NNTGTTTAYY	PBM Barrera et al.(2016) FOXC1_I126M	0.671	0.444
FOXI1 M03026_2.00	Homo sapiens	GTAAACA	TGTTTAC	SELEX Jolma et al.(2013) FOXI1_1	0.666	0.432
FOXI1 M03027_2.00	Homo sapiens	RTGTKTACGGTAAACAA	TTGTTTACCGTAMACAY	SELEX Jolma et al.(2013) FOXI1_2	0.666	0.432
FOXI1 M04827_2.00	Homo sapiens	NNNNNRTMAACAN	NTGTTKAYNNNNN	SELEX Yin et al.(2017) FOXI1_eDBD_HT-SELEX	0.666	0.432
FOXI1 M04829_2.00	Homo sapiens	AAYGTAAACAMW	WKTGTTTACRTT	SELEX Yin et al.(2017) FOXI1_FL_HT-SELEX	0.666	0.432
FOXI1 M09095_2.00	Homo sapiens	RRCCAATCAVAD	HTBTGATTGGYY	Misc Kulakovskiy et al.(2013) FOXI1_HUMAN.H11MO.0.B	0.666	0.432
FOXI1 M10556_2.00	Homo sapiens	HAWAYAAAYAHVH	DBDTRTTTRTWTD	Transfac Matys et al.(2006) V$HFH3_01	0.666	0.432
FOXI1 M04828_2.00	Homo sapiens	NWWVHRTAAACAH	DTGTTTAYDBWWN	SELEX Yin et al.(2017) FOXI1_eDBD_Methyl-HT-SELEX	0.666	0.432
FOXI1 M04830_2.00	Homo sapiens	AAYRTAAACAAW	WTTGTTTAYRTT	SELEX Yin et al.(2017) FOXI1_FL_Methyl-HT-SELEX	0.666	0.432
Foxi1 M09109_2.00	Mus musculus	RRCCAATCAVAD	HTBTGATTGGYY	Misc Kulakovskiy et al.(2013) FOXI1_MOUSE.H11MO.0.B	0.666	0.420
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSAMXP00000017936	Forkhead	431	514	RPPFTYAALIRQAIFESPDKQLTLNEIYNWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEMEFQKRRPQK

Links
Other Forkhead family TFs
Other *Astyanax mexicanus* TFs

633 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ANCCAN_10515	Ancylostoma caninum	ANCCAN_10515	N
ANCCEY_09663	Ancylostoma ceylanicum	ANCCEY_09663	N
peb-1	Caenorhabditis elegans	WBGene00003968	N
CRE00468	Caenorhabditis remanei	CRE00468	N
CGOC_0000129701	Cylicostephanus goldi	CGOC_0000129701	N
DICVIV_11352	Dictyocaulus viviparus	DICVIV_11352	N
HCOI00346400	Haemonchus contortus	HCOI00346400	N
HPLM_0000045701	Haemonchus placei	HPLM_0000045701	N
HPBE_0000694301	Heligmosomoides bakeri	HPBE_0000694301	N
NECAME_09766	Necator americanus	NECAME_09766	N
OESDEN_04289	Oesophagostomum dentatum	OESDEN_04289	N
OESDEN_16355	Oesophagostomum dentatum	OESDEN_16355	N
scaffold1952-EXSNAP2012.1	Pristionchus exspectatus	scaffold1952-EXSNAP2012.1	N
TELCIR_05972	Teladorsagia circumcincta	TELCIR_05972	N

ENSAMXG00000017401 (Astyanax mexicanus) Forkhead

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

633 Related TFs

ENSAMXG00000017401 **(Astyanax mexicanus)
Forkhead**