CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

FOXJ2 *(Bos taurus)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00250 (Forkhead)	IPR001766	ENSBTAG00000019742	T185262_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Foxj2 M00790_2.00	Mus musculus	VHMAAYANN	NNTRTTKDB	PBM Weirauch et al.(2013) pTH3043	0.861	1.000
FOXJ2 M03016_2.00	Homo sapiens	GTAAACARTMAACA	TGTTKAYTGTTTAC	SELEX Jolma et al.(2013) FOXJ2_1	0.861	1.000
FOXJ2 M03017_2.00	Homo sapiens	RTAAACAH	DTGTTTAY	SELEX Jolma et al.(2013) FOXJ2_2	0.861	1.000
FOXJ2 M03018_2.00	Homo sapiens	GTAAACAWMAACA	TGTTKWTGTTTAC	SELEX Jolma et al.(2013) FOXJ2_3	0.861	1.000
FOXJ2 M04809_2.00	Homo sapiens	NTRTTTACAAYANN	NNTRTTGTAAAYAN	SELEX Yin et al.(2017) FOXJ2_eDBD_HT-SELEX	0.861	1.000
FOXJ2 M09084_2.00	Homo sapiens	WARAYAAAYA	TRTTTRTYTW	Misc Kulakovskiy et al.(2013) FOXJ2_HUMAN.H11MO.0.C	0.861	1.000
Foxj2 M09100_2.00	Mus musculus	WARAYAAAYA	TRTTTRTYTW	Misc Kulakovskiy et al.(2013) FOXJ2_MOUSE.H11MO.0.C	0.861	1.000
FOXJ2 M10527_2.00	Homo sapiens	HHNHMRAYAAAYANHNND	HNNDNTRTTTRTYKDNDD	Transfac Matys et al.(2006) V$FOXJ2_01	0.861	1.000
FOXJ2 M10528_2.00	Homo sapiens	VYMAYAATATTTKN	NMAAATATTRTKRB	Transfac Matys et al.(2006) V$FOXJ2_02	0.861	1.000
FOXJ2 M04810_2.00	Homo sapiens	NTRTTTACAAYANN	NNTRTTGTAAAYAN	SELEX Yin et al.(2017) FOXJ2_eDBD_Methyl-HT-SELEX	0.861	1.000
Foxj2 M01980_2.00	Mus musculus	RTAAACAN	NTGTTTAY	PBM Weirauch et al.(2014) pTH6638	0.852	0.929
Foxj3 M00160_2.00	Mus musculus	NRTAAACAHN	NDTGTTTAYN	PBM Badis et al.(2009) Foxj3_0982	0.781	0.788
Foxj3 M01981_2.00	Mus musculus	VNHHAYANN	NNTRTDDNB	PBM Weirauch et al.(2014) pTH6591	0.781	0.788
Foxj3 M03055_2.00	Mus musculus	ACGGACACAAT	ATTGTGTCCGT	SELEX Jolma et al.(2013) Foxj3_1	0.781	0.788
Foxj3 M03056_2.00	Mus musculus	GTAAACARTMAACA	TGTTKAYTGTTTAC	SELEX Jolma et al.(2013) Foxj3_2	0.781	0.788
Foxj3 M03057_2.00	Mus musculus	RTAAACAW	WTGTTTAY	SELEX Jolma et al.(2013) Foxj3_3	0.781	0.788
Foxj3 M03058_2.00	Mus musculus	RTAAACAWAAACA	TGTTTWTGTTTAY	SELEX Jolma et al.(2013) Foxj3_4	0.781	0.788
Foxj3 M09102_2.00	Mus musculus	WAAMMATAAACAN	NTGTTTATKKTTW	Misc Kulakovskiy et al.(2013) FOXJ3_MOUSE.H11MO.0.A	0.781	0.788
FOXJ3 M03046_2.00	Homo sapiens	RTAAAVAA	TTBTTTAY	SELEX Jolma et al.(2013) FOXJ3_1	0.780	0.788
FOXJ3 M03047_2.00	Homo sapiens	GTAAACARTMAACA	TGTTKAYTGTTTAC	SELEX Jolma et al.(2013) FOXJ3_2	0.780	0.788
FOXJ3 M03048_2.00	Homo sapiens	GTAAACATAAACA	TGTTTATGTTTAC	SELEX Jolma et al.(2013) FOXJ3_3	0.780	0.788
FOXJ3 M02736_2.00	Homo sapiens	AAACAATAAACA	TGTTTATTGTTT	SELEX Jolma et al.(2010) FOXJ3_dimer	0.780	0.788
FOXJ3 M02737_2.00	Homo sapiens	RTAAACAW	WTGTTTAY	SELEX Jolma et al.(2010) FOXJ3_monomer	0.780	0.788
FOXJ3 M04859_2.00	Homo sapiens	DYGTMAACAH	DTGTTKACRH	SELEX Yin et al.(2017) FOXJ3_eDBD_HT-SELEX	0.780	0.788
FOXJ3 M09098_2.00	Homo sapiens	WAAMMATAAACAN	NTGTTTATKKTTW	Misc Kulakovskiy et al.(2013) FOXJ3_HUMAN.H11MO.0.A	0.780	0.788
FOXJ3 M04860_2.00	Homo sapiens	RYGTMAACAH	DTGTTKACRY	SELEX Yin et al.(2017) FOXJ3_eDBD_Methyl-HT-SELEX	0.780	0.788
SPU_007644 M01987_2.00	Strongylocentrotus purpuratus	NNHHAYDNN	NNHRTDDNN	PBM Weirauch et al.(2014) pTH6497	0.778	0.765
NCU06173 M01992_2.00	Neurospora crassa	RTAAACAH	DTGTTTAY	PBM Weirauch et al.(2014) pTH8896	0.693	0.553
FOXK2 M08118_2.00	Homo sapiens	NNRTAAACANN	NNTGTTTAYNN	ChIP-seq Mathelier et al.(2014) MA1103.1	0.684	0.565
FOXI1 M03026_2.00	Homo sapiens	GTAAACA	TGTTTAC	SELEX Jolma et al.(2013) FOXI1_1	0.683	0.565
FOXI1 M03027_2.00	Homo sapiens	RTGTKTACGGTAAACAA	TTGTTTACCGTAMACAY	SELEX Jolma et al.(2013) FOXI1_2	0.683	0.565
FOXI1 M04827_2.00	Homo sapiens	NNNNNRTMAACAN	NTGTTKAYNNNNN	SELEX Yin et al.(2017) FOXI1_eDBD_HT-SELEX	0.683	0.565
FOXI1 M04829_2.00	Homo sapiens	AAYGTAAACAMW	WKTGTTTACRTT	SELEX Yin et al.(2017) FOXI1_FL_HT-SELEX	0.683	0.565
FOXI1 M09095_2.00	Homo sapiens	RRCCAATCAVAD	HTBTGATTGGYY	Misc Kulakovskiy et al.(2013) FOXI1_HUMAN.H11MO.0.B	0.683	0.565
FOXI1 M10556_2.00	Homo sapiens	HAWAYAAAYAHVH	DBDTRTTTRTWTD	Transfac Matys et al.(2006) V$HFH3_01	0.683	0.565
FOXI1 M04828_2.00	Homo sapiens	NWWVHRTAAACAH	DTGTTTAYDBWWN	SELEX Yin et al.(2017) FOXI1_eDBD_Methyl-HT-SELEX	0.683	0.565
FOXI1 M04830_2.00	Homo sapiens	AAYRTAAACAAW	WTTGTTTAYRTT	SELEX Yin et al.(2017) FOXI1_FL_Methyl-HT-SELEX	0.683	0.565
Foxi1 M09109_2.00	Mus musculus	RRCCAATCAVAD	HTBTGATTGGYY	Misc Kulakovskiy et al.(2013) FOXI1_MOUSE.H11MO.0.B	0.683	0.553
Foxj1 M00161_2.00	Mus musculus	NNHAAACAAANN	NNTTTGTTTDNN	PBM Badis et al.(2009) Foxj1_3125	0.679	0.600
FOXJ1 M10547_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HFH4_01	0.679	0.600
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSBTAP00000026309	Forkhead	66	152	KPRYSYATLITYAINSSPAKKMTLSEIYRWICDNFPYYKNAGIGWKNSIRHNLSLNKCFRKVPRPRDDPGKGSYWTIDTCPDISRKR

Links
Other Forkhead family TFs
Other *Bos taurus* TFs

720 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action

FOXJ2 (Bos taurus) Forkhead

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

720 Related TFs

FOXJ2 **(Bos taurus)
Forkhead**