CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSONIG00000020267 *(Oreochromis niloticus)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00250 (Forkhead)	IPR001766	ENSONIG00000020267	T186594_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
FOXP1 M00836_2.00	Homo sapiens	NRTMAACANN	NNTGTTKAYN	PBM Gabut et al.(2011) pEX0123	0.827	0.988
FOXP1 M00837_2.00	Homo sapiens	DGTAAACAA	TTGTTTACH	PBM Gabut et al.(2011) pEX0124	0.827	0.988
FOXP1 M01976_2.00	Homo sapiens	RTAAACAA	TTGTTTAY	PBM Weirauch et al.(2014) pTH5656	0.827	0.988
Foxp1 M00793_2.00	Mus musculus	NRTMAAYAN	NTRTTKAYN	PBM Weirauch et al.(2013) pTH3855	0.827	0.988
FOXP1 M04811_2.00	Homo sapiens	NTGTTTRYNRTNNNNNNBNAYRVWMAACAN	NTGTTKWBYRTNVNNNNNNAYNRYAAACAN	SELEX Yin et al.(2017) FOXP1_eDBD_HT-SELEX	0.827	0.988
FOXP1 M08115_2.00	Homo sapiens	NDGTAAACAVNN	NNBTGTTTACHN	ChIP-seq Mathelier et al.(2014) MA0481.2	0.827	0.988
FOXP1 M09086_2.00	Homo sapiens	RKAAACAVM	KBTGTTTMY	Misc Kulakovskiy et al.(2013) FOXP1_HUMAN.H11MO.0.A	0.827	0.988
FOXP1 M09541_2.00	Homo sapiens	NDGTAAACAVNN	NNBTGTTTACHN	Misc Heinz et al.(2010) H9-FOXP1_GSE31006	0.827	0.988
FOXP1 M10536_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXP1_01	0.827	0.988
FOXP1 M04812_2.00	Homo sapiens	NTGTTTRYBRTNNNNNNBNAYRVWMAACAH	DTGTTKWBYRTNVNNNNNNAYVRYAAACAN	SELEX Yin et al.(2017) FOXP1_eDBD_Methyl-HT-SELEX	0.827	0.988
Foxp2 M00792_2.00	Mus musculus	RTAAACAD	HTGTTTAY	PBM Weirauch et al.(2013) pTH1288	0.751	0.889
FOXP2 M05866_2.00	Homo sapiens	RTAAAYAWNN	NNWTRTTTAY	SMiLE-seq Isakova et al.(2017) FOXP2	0.751	0.889
FOXP2 M08116_2.00	Homo sapiens	NDGTAAACAVN	NBTGTTTACHN	ChIP-seq Mathelier et al.(2014) MA0593.1	0.751	0.889
FOXP2 M09089_2.00	Homo sapiens	DGTAAACAV	BTGTTTACH	Misc Kulakovskiy et al.(2013) FOXP2_HUMAN.H11MO.0.C	0.751	0.889
Foxp2 M09101_2.00	Mus musculus	NGTAAACAN	NTGTTTACN	Misc Kulakovskiy et al.(2013) FOXP2_MOUSE.H11MO.0.A	0.751	0.889
FoxP M03753_2.00	Drosophila melanogaster	AAACAACAACAA	TTGTTGTTGTTT	SELEX Nitta et al.(2015) CG16899_1	0.745	0.765
FoxP M06201_2.00	Drosophila melanogaster	VRTAAACAA	TTGTTTAYB	B1H Zhu et al.(2011) CG16899_SANGER_5_FBgn0037735	0.745	0.765
FoxP M06202_2.00	Drosophila melanogaster	VNNVBBAAAAAAAD	HTTTTTTTVVBNNB	B1H Zhu et al.(2011) CG2052_SANGER_2.5_FBgn0039905	0.745	0.765
FoxP M06203_2.00	Drosophila melanogaster	NNNNNRAAAAAAWNN	NNWTTTTTTYNNNNN	B1H Zhu et al.(2011) CG2052_SOLEXA_2.5_FBgn0039905	0.745	0.765
Foxj3 M00160_2.00	Mus musculus	NRTAAACAHN	NDTGTTTAYN	PBM Badis et al.(2009) Foxj3_0982	0.679	0.469
Foxj3 M01981_2.00	Mus musculus	VNHHAYANN	NNTRTDDNB	PBM Weirauch et al.(2014) pTH6591	0.679	0.469
Foxj3 M03055_2.00	Mus musculus	ACGGACACAAT	ATTGTGTCCGT	SELEX Jolma et al.(2013) Foxj3_1	0.679	0.469
Foxj3 M03056_2.00	Mus musculus	GTAAACARTMAACA	TGTTKAYTGTTTAC	SELEX Jolma et al.(2013) Foxj3_2	0.679	0.469
Foxj3 M03057_2.00	Mus musculus	RTAAACAW	WTGTTTAY	SELEX Jolma et al.(2013) Foxj3_3	0.679	0.469
Foxj3 M03058_2.00	Mus musculus	RTAAACAWAAACA	TGTTTWTGTTTAY	SELEX Jolma et al.(2013) Foxj3_4	0.679	0.469
Foxj3 M09102_2.00	Mus musculus	WAAMMATAAACAN	NTGTTTATKKTTW	Misc Kulakovskiy et al.(2013) FOXJ3_MOUSE.H11MO.0.A	0.679	0.469
FOXJ3 M03046_2.00	Homo sapiens	RTAAAVAA	TTBTTTAY	SELEX Jolma et al.(2013) FOXJ3_1	0.678	0.469
FOXJ3 M03047_2.00	Homo sapiens	GTAAACARTMAACA	TGTTKAYTGTTTAC	SELEX Jolma et al.(2013) FOXJ3_2	0.678	0.469
FOXJ3 M03048_2.00	Homo sapiens	GTAAACATAAACA	TGTTTATGTTTAC	SELEX Jolma et al.(2013) FOXJ3_3	0.678	0.469
FOXJ3 M02736_2.00	Homo sapiens	AAACAATAAACA	TGTTTATTGTTT	SELEX Jolma et al.(2010) FOXJ3_dimer	0.678	0.469
FOXJ3 M02737_2.00	Homo sapiens	RTAAACAW	WTGTTTAY	SELEX Jolma et al.(2010) FOXJ3_monomer	0.678	0.469
FOXJ3 M04859_2.00	Homo sapiens	DYGTMAACAH	DTGTTKACRH	SELEX Yin et al.(2017) FOXJ3_eDBD_HT-SELEX	0.678	0.469
FOXJ3 M09098_2.00	Homo sapiens	WAAMMATAAACAN	NTGTTTATKKTTW	Misc Kulakovskiy et al.(2013) FOXJ3_HUMAN.H11MO.0.A	0.678	0.469
FOXJ3 M04860_2.00	Homo sapiens	RYGTMAACAH	DTGTTKACRY	SELEX Yin et al.(2017) FOXJ3_eDBD_Methyl-HT-SELEX	0.678	0.469
SPU_007644 M01987_2.00	Strongylocentrotus purpuratus	NNHHAYDNN	NNHRTDDNN	PBM Weirauch et al.(2014) pTH6497	0.665	0.457
Foxc2 M00796_2.00	Mus musculus	HNNRHMAAYA	TRTTKDYNND	PBM Weirauch et al.(2013) pTH3796	0.665	0.432
FOXC2 M03036_2.00	Homo sapiens	NRTMAATATTDWYN	NRWHAATATTKAYN	SELEX Jolma et al.(2013) FOXC2_1	0.665	0.432
FOXC2 M03037_2.00	Homo sapiens	RTAAAYAAACA	TGTTTRTTTAY	SELEX Jolma et al.(2013) FOXC2_2	0.665	0.432
FOXC2 M03038_2.00	Homo sapiens	WAHRTMAAYAWW	WWTRTTKAYDTW	SELEX Jolma et al.(2013) FOXC2_3	0.665	0.432
FOXC2 M04841_2.00	Homo sapiens	NHVNRYMAACAH	DTGTTKRYNBDN	SELEX Yin et al.(2017) FOXC2_eDBD_HT-SELEX_1	0.665	0.432
FOXC2 M04842_2.00	Homo sapiens	RHAMAYAAACAH	DTGTTTRTKTDY	SELEX Yin et al.(2017) FOXC2_eDBD_HT-SELEX_2	0.665	0.432
FOXC2 M10559_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FKHL14_Q2	0.665	0.432
FOXC2 M04843_2.00	Homo sapiens	NHNNRYMAACAN	NTGTTKRYNNDN	SELEX Yin et al.(2017) FOXC2_eDBD_Methyl-HT-SELEX_1	0.665	0.432
FOXC2 M04844_2.00	Homo sapiens	VHMMAYAAACAN	NTGTTTRTKKDB	SELEX Yin et al.(2017) FOXC2_eDBD_Methyl-HT-SELEX_2	0.665	0.432
FOXK2 M08118_2.00	Homo sapiens	NNRTAAACANN	NNTGTTTAYNN	ChIP-seq Mathelier et al.(2014) MA1103.1	0.665	0.444
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSONIP00000025537	Forkhead	449	532	RPPFTYASLIRQAILESPEKQLTLNEIYNWFTRMFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEIEFQKRRPQK

Links
Other Forkhead family TFs
Other *Oreochromis niloticus* TFs

663 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ENSCPOG00000019800	Cavia porcellus	ENSCPOG00000019800	N
ENSCSAG00000000252	Chlorocebus sabaeus	ENSCSAG00000000252	N
ASCL5	Dasypus novemcinctus	ENSDNOG00000047337	N
ASCL5	Felis catus	ENSFCAG00000024816	N
ASCL5	Homo sapiens	ENSG00000232237	N
ENSSTOG00000024612	Ictidomys tridecemlineatus	ENSSTOG00000024612	N
ASCL5	Macaca mulatta	ENSMMUG00000017419	N
ASCL4	Monodelphis domestica	ENSMODG00000024943	N
ENSORLG00000010785	Oryzias latipes	ENSORLG00000010785	N
ENSORLG00000011010	Oryzias latipes	ENSORLG00000011010	N
ASCL5	Otolemur garnettii	ENSOGAG00000027579	N
ENSPANG00000016203	Papio anubis	ENSPANG00000016203	N
ENSPFOG00000020327	Poecilia formosa	ENSPFOG00000020327	N
ENSPFOG00000024501	Poecilia formosa	ENSPFOG00000024501	N
Ascl4	Rattus norvegicus	ENSRNOG00000031493	N
Ascl5	Rattus norvegicus	ENSRNOG00000033391	N
ENSSHAG00000016197	Sarcophilus harrisii	ENSSHAG00000016197	N

ENSONIG00000020267 (Oreochromis niloticus) Forkhead

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

663 Related TFs

ENSONIG00000020267 **(Oreochromis niloticus)
Forkhead**