CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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FOXB2
(
Vicugna pacos
)
Forkhead
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00250 (Forkhead)
IPR001766
ENSVPAG00000002649
T187326_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Foxb1
M01983_2.00
Mus musculus
TRTTKAYWYW
WRWRTMAAYA
PBM
Weirauch et al.(2014)
pTH2808
0.874
0.930
FOXB1
M03028_2.00
Homo sapiens
GAATGACACRGCKV
BMGCYGTGTCATTC
SELEX
Jolma et al.(2013)
FOXB1_1
0.874
0.930
FOXB1
M03029_2.00
Homo sapiens
WRWGTMAATATTKACWYW
WRWGTMAATATTKACWYW
SELEX
Jolma et al.(2013)
FOXB1_2
0.874
0.930
FOXB1
M03030_2.00
Homo sapiens
WTRTTKACWTW
WAWGTMAAYAW
SELEX
Jolma et al.(2013)
FOXB1_3
0.874
0.930
FOXB1
M03031_2.00
Homo sapiens
NTRTTTACW
WGTAAAYAN
SELEX
Jolma et al.(2013)
FOXB1_4
0.874
0.930
FOXB1
M04837_2.00
Homo sapiens
NWRDGYMAATATTKRCWYWD
HWRWGYMAATATTKRCHYWN
SELEX
Yin et al.(2017)
FOXB1_eDBD_HT-SELEX
0.874
0.930
FOXB1
M04838_2.00
Homo sapiens
NWRNGYMAATATTKRCDYWD
HWRHGYMAATATTKRCNYWN
SELEX
Yin et al.(2017)
FOXB1_eDBD_Methyl-HT-SELEX
0.874
0.930
fd96Ca
M03743_2.00
Drosophila melanogaster
WRWGYMAATATTKRCWYW
WRWGYMAATATTKRCWYW
SELEX
Nitta et al.(2015)
fd96Ca_1
0.855
0.837
lin-31
M00665_2.00
Caenorhabditis elegans
NWRTAAAYANN
NNTRTTTAYWN
PBM
Narasimhan et al.(2015)
pTH9116
0.783
0.767
fkh
M03734_2.00
Drosophila melanogaster
WRWGYMAATATTKRCWYW
WRWGYMAATATTKRCWYW
SELEX
Nitta et al.(2015)
fkh_1
0.672
0.721
fkh
M03735_2.00
Drosophila melanogaster
HWASAATAAYAWT
AATRTTATTSTWD
SELEX
Nitta et al.(2015)
fkh_2
0.672
0.721
fkh
M06473_2.00
Drosophila melanogaster
NTRDDYAAACA
TGTTTRHHYAN
B1H
Mathelier et al.(2014)
MA0446.1
0.672
0.721
fkh
M06194_2.00
Drosophila melanogaster
NTRDDYAAACA
TGTTTRHHYAN
B1H
Zhu et al.(2011)
fkh_NAR_FBgn0000659
0.672
0.721
fkh
M08200_2.00
Drosophila melanogaster
NTRDDYAAACA
TGTTTRHHYAN
ChIP-seq
Contrino et al.(2012)
Mf15
0.672
0.721
fkh
M09668_2.00
Drosophila melanogaster
TRTTTRCAHAAG
CTTDTGYAAAYA
Misc
Kulakovskiy et al.(2009)
fkh
0.672
0.721
Foxa2
M00162_2.00
Mus musculus
GTAAAYAW
WTRTTTAC
PBM
Badis et al.(2009)
Foxa2_2830
0.665
0.721
FOXA2
M04815_2.00
Homo sapiens
NHVNRYMAATATTKACNNDN
NHNNGTMAATATTKRYNBDN
SELEX
Yin et al.(2017)
FOXA2_eDBD_HT-SELEX
0.665
0.721
Foxa2
M08121_2.00
Mus musculus
TRTTTACWYWDN
NHWRWGTAAAYA
ChIP-seq
Mathelier et al.(2014)
MA0047.2
0.665
0.721
FOXA2
M07959_2.00
Homo sapiens
NNWRWGYAAAYANNN
NNNTRTTTRCWYWNN
ChIP-seq
Gerstein et al.(2012)
HepG2_FOXA2_HudsonAlpha
0.665
0.721
FOXA2
M09088_2.00
Homo sapiens
NHWRWGTAAACA
TGTTTACWYWDN
Misc
Kulakovskiy et al.(2013)
FOXA2_HUMAN.H11MO.0.A
0.665
0.721
Foxa2
M09104_2.00
Mus musculus
BNHTRTTKACWYW
WRWGTMAAYADNV
Misc
Kulakovskiy et al.(2013)
FOXA2_MOUSE.H11MO.0.A
0.665
0.721
FOXA2
M09542_2.00
Homo sapiens
WVWGTMAACANV
BNTGTTKACWBW
Misc
Heinz et al.(2010)
Liver-Foxa2_GSE25694
0.665
0.721
FOXA2
M10540_2.00
Homo sapiens
WAARYAAAYADKNMV
BKNMHTRTTTRYTTW
Transfac
Matys et al.(2006)
V$HNF3B_01
0.665
0.721
FOXA2
M10541_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3B_Q6
0.665
0.721
AAA20679
M10575_2.00
Xenopus laevis
WNWGTMAACAWWMW
WKWWTGTTKACWNW
Transfac
Matys et al.(2006)
V$XFD3_01
0.665
0.721
FOXA2
M04816_2.00
Homo sapiens
NWRNRYMAATATTKACWNWN
NWNWGTMAATATTKRYNYWN
SELEX
Yin et al.(2017)
FOXA2_eDBD_Methyl-HT-SELEX
0.665
0.721
For this family, TFs with SR scores >
0.664
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSVPAP00000002450
Forkhead
13
102
KPPYSYISLTAMAIQHSAEKMLPLSDIYKFIMERFPYYREHTQRWQNSLRHNLSFNDCFIKIPRRPDQPGKGSFWALHPDCGDMFENGSF
Links
Other
Forkhead
family TFs
Other
Vicugna pacos
TFs
403 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy