CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

MDOA009504 *(Musca domestica)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00250 (Forkhead)	IPR001766	MDOA009504	T190200_2.00	Vectorbase (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
FOXK2 M08118_2.00	Homo sapiens	NNRTAAACANN	NNTGTTTAYNN	ChIP-seq Mathelier et al.(2014) MA1103.1	0.786	0.826
SPU_025010 M01988_2.00	Strongylocentrotus purpuratus	NNVNHHAYAN	NTRTDDNBNN	PBM Weirauch et al.(2014) pTH6641	0.765	0.826
Foxk1 M00163_2.00	Mus musculus	RWMAACAA	TTGTTKWY	PBM Badis et al.(2009) Foxk1_2323	0.757	0.837
Foxk1 M03061_2.00	Mus musculus	CGGACACAATC	GATTGTGTCCG	SELEX Jolma et al.(2013) Foxk1_1	0.757	0.837
Foxk1 M03062_2.00	Mus musculus	RTAAACA	TGTTTAY	SELEX Jolma et al.(2013) Foxk1_2	0.757	0.837
Foxk1 M09113_2.00	Mus musculus	NNGDMAACAVV	BBTGTTKHCNN	Misc Kulakovskiy et al.(2013) FOXK1_MOUSE.H11MO.0.A	0.757	0.837
FOXK1 M01977_2.00	Homo sapiens	NNRWMMAYAN	NTRTKKWYNN	PBM Weirauch et al.(2014) pTH6108	0.757	0.826
FOXK1 M03025_2.00	Homo sapiens	CGGACACAAT	ATTGTGTCCG	SELEX Jolma et al.(2013) FOXK1_1	0.757	0.826
FOXK1 M04825_2.00	Homo sapiens	NDNRTMAAYAN	NTRTTKAYNHN	SELEX Yin et al.(2017) FOXK1_eDBD_HT-SELEX	0.757	0.826
FOXK1 M08120_2.00	Homo sapiens	NNNGTAAACANVNN	NNBNTGTTTACNNN	ChIP-seq Mathelier et al.(2014) MA0852.2	0.757	0.826
FOXK1 M09094_2.00	Homo sapiens	VNDRDAAACA	TGTTTHYHNB	Misc Kulakovskiy et al.(2013) FOXK1_HUMAN.H11MO.0.A	0.757	0.826
FOXK1 M04826_2.00	Homo sapiens	NWYRYAAWYAD	HTRWTTRYRWN	SELEX Yin et al.(2017) FOXK1_eDBD_Methyl-HT-SELEX	0.757	0.826
FOXI1 M03026_2.00	Homo sapiens	GTAAACA	TGTTTAC	SELEX Jolma et al.(2013) FOXI1_1	0.718	0.535
FOXI1 M03027_2.00	Homo sapiens	RTGTKTACGGTAAACAA	TTGTTTACCGTAMACAY	SELEX Jolma et al.(2013) FOXI1_2	0.718	0.535
FOXI1 M04827_2.00	Homo sapiens	NNNNNRTMAACAN	NTGTTKAYNNNNN	SELEX Yin et al.(2017) FOXI1_eDBD_HT-SELEX	0.718	0.535
FOXI1 M04829_2.00	Homo sapiens	AAYGTAAACAMW	WKTGTTTACRTT	SELEX Yin et al.(2017) FOXI1_FL_HT-SELEX	0.718	0.535
FOXI1 M09095_2.00	Homo sapiens	RRCCAATCAVAD	HTBTGATTGGYY	Misc Kulakovskiy et al.(2013) FOXI1_HUMAN.H11MO.0.B	0.718	0.535
FOXI1 M10556_2.00	Homo sapiens	HAWAYAAAYAHVH	DBDTRTTTRTWTD	Transfac Matys et al.(2006) V$HFH3_01	0.718	0.535
FOXI1 M04828_2.00	Homo sapiens	NWWVHRTAAACAH	DTGTTTAYDBWWN	SELEX Yin et al.(2017) FOXI1_eDBD_Methyl-HT-SELEX	0.718	0.535
FOXI1 M04830_2.00	Homo sapiens	AAYRTAAACAAW	WTTGTTTAYRTT	SELEX Yin et al.(2017) FOXI1_FL_Methyl-HT-SELEX	0.718	0.535
Foxi1 M09109_2.00	Mus musculus	RRCCAATCAVAD	HTBTGATTGGYY	Misc Kulakovskiy et al.(2013) FOXI1_MOUSE.H11MO.0.B	0.718	0.523
FOXJ3 M03046_2.00	Homo sapiens	RTAAAVAA	TTBTTTAY	SELEX Jolma et al.(2013) FOXJ3_1	0.695	0.581
FOXJ3 M03047_2.00	Homo sapiens	GTAAACARTMAACA	TGTTKAYTGTTTAC	SELEX Jolma et al.(2013) FOXJ3_2	0.695	0.581
FOXJ3 M03048_2.00	Homo sapiens	GTAAACATAAACA	TGTTTATGTTTAC	SELEX Jolma et al.(2013) FOXJ3_3	0.695	0.581
FOXJ3 M02736_2.00	Homo sapiens	AAACAATAAACA	TGTTTATTGTTT	SELEX Jolma et al.(2010) FOXJ3_dimer	0.695	0.581
FOXJ3 M02737_2.00	Homo sapiens	RTAAACAW	WTGTTTAY	SELEX Jolma et al.(2010) FOXJ3_monomer	0.695	0.581
FOXJ3 M04859_2.00	Homo sapiens	DYGTMAACAH	DTGTTKACRH	SELEX Yin et al.(2017) FOXJ3_eDBD_HT-SELEX	0.695	0.581
FOXJ3 M09098_2.00	Homo sapiens	WAAMMATAAACAN	NTGTTTATKKTTW	Misc Kulakovskiy et al.(2013) FOXJ3_HUMAN.H11MO.0.A	0.695	0.581
FOXJ3 M04860_2.00	Homo sapiens	RYGTMAACAH	DTGTTKACRY	SELEX Yin et al.(2017) FOXJ3_eDBD_Methyl-HT-SELEX	0.695	0.581
Foxj3 M00160_2.00	Mus musculus	NRTAAACAHN	NDTGTTTAYN	PBM Badis et al.(2009) Foxj3_0982	0.694	0.581
Foxj3 M01981_2.00	Mus musculus	VNHHAYANN	NNTRTDDNB	PBM Weirauch et al.(2014) pTH6591	0.694	0.581
Foxj3 M03055_2.00	Mus musculus	ACGGACACAAT	ATTGTGTCCGT	SELEX Jolma et al.(2013) Foxj3_1	0.694	0.581
Foxj3 M03056_2.00	Mus musculus	GTAAACARTMAACA	TGTTKAYTGTTTAC	SELEX Jolma et al.(2013) Foxj3_2	0.694	0.581
Foxj3 M03057_2.00	Mus musculus	RTAAACAW	WTGTTTAY	SELEX Jolma et al.(2013) Foxj3_3	0.694	0.581
Foxj3 M03058_2.00	Mus musculus	RTAAACAWAAACA	TGTTTWTGTTTAY	SELEX Jolma et al.(2013) Foxj3_4	0.694	0.581
Foxj3 M09102_2.00	Mus musculus	WAAMMATAAACAN	NTGTTTATKKTTW	Misc Kulakovskiy et al.(2013) FOXJ3_MOUSE.H11MO.0.A	0.694	0.581
SPU_007644 M01987_2.00	Strongylocentrotus purpuratus	NNHHAYDNN	NNHRTDDNN	PBM Weirauch et al.(2014) pTH6497	0.692	0.581
NCU00019 M01991_2.00	Neurospora crassa	NNNGTAAAYAHN	NDTRTTTACNNN	PBM Weirauch et al.(2014) pTH9655	0.691	0.605
FOXC1 M00257_2.00	Homo sapiens	NNNVHHAAYA	TRTTDDBNNN	PBM Barrera et al.(2016) FOXC1_REF	0.680	0.593
Foxc1 M01982_2.00	Mus musculus	HNNRHMAAYA	TRTTKDYNND	PBM Weirauch et al.(2014) pTH2673	0.680	0.593
FOXC1 M03013_2.00	Homo sapiens	AWRTAAAYAAAYA	TRTTTRTTTAYWT	SELEX Jolma et al.(2013) FOXC1_1	0.680	0.593
FOXC1 M03014_2.00	Homo sapiens	NRWMAATATTKWYN	NRWMAATATTKWYN	SELEX Jolma et al.(2013) FOXC1_2	0.680	0.593
FOXC1 M03015_2.00	Homo sapiens	WRWRTMAAYAW	WTRTTKAYWYW	SELEX Jolma et al.(2013) FOXC1_3	0.680	0.593
Foxc1 M03059_2.00	Mus musculus	RTAAAYAAACA	TGTTTRTTTAY	SELEX Jolma et al.(2013) Foxc1_1	0.680	0.593
Foxc1 M03060_2.00	Mus musculus	RTAAACA	TGTTTAY	SELEX Jolma et al.(2013) Foxc1_2	0.680	0.593
FOXC1 M09083_2.00	Homo sapiens	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_HUMAN.H11MO.0.C	0.680	0.593
Foxc1 M09111_2.00	Mus musculus	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_MOUSE.H11MO.0.C	0.680	0.593
FOXC1 M10525_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXC1_Q4	0.680	0.593
FOXC1 M10526_2.00	Homo sapiens	TSTTTATTTACDBNVN	NBNVHGTAAATAAASA	Transfac Matys et al.(2006) V$FREAC3_01	0.680	0.593
FOXC1 M00253_2.00	Homo sapiens	NNHATAAWHAN	NTDWTTATDNN	PBM Barrera et al.(2016) FOXC1_F112S	0.680	0.593
FOXC1 M00255_2.00	Homo sapiens	NRTATATWHNNN	NNNDWATATAYN	PBM Barrera et al.(2016) FOXC1_L130F	0.680	0.581
FOXC1 M00256_2.00	Homo sapiens	NNNNWWTYAMAWN	NWTKTRAWWNNNN	PBM Barrera et al.(2016) FOXC1_P79L	0.680	0.581
FOXC1 M00258_2.00	Homo sapiens	NNNAMAAYANN	NNTRTTKTNNN	PBM Barrera et al.(2016) FOXC1_S131L	0.680	0.581
FOXC1 M00259_2.00	Homo sapiens	RTAAACAW	WTGTTTAY	PBM Barrera et al.(2016) FOXC1_S82T	0.680	0.581
foxg1a M01985_2.00	Oryzias latipes	RTAAACAH	DTGTTTAY	PBM Weirauch et al.(2014) pTH6729	0.675	0.581
Foxj2 M00790_2.00	Mus musculus	VHMAAYANN	NNTRTTKDB	PBM Weirauch et al.(2013) pTH3043	0.675	0.558
FOXJ2 M03016_2.00	Homo sapiens	GTAAACARTMAACA	TGTTKAYTGTTTAC	SELEX Jolma et al.(2013) FOXJ2_1	0.675	0.558
FOXJ2 M03017_2.00	Homo sapiens	RTAAACAH	DTGTTTAY	SELEX Jolma et al.(2013) FOXJ2_2	0.675	0.558
FOXJ2 M03018_2.00	Homo sapiens	GTAAACAWMAACA	TGTTKWTGTTTAC	SELEX Jolma et al.(2013) FOXJ2_3	0.675	0.558
FOXJ2 M04809_2.00	Homo sapiens	NTRTTTACAAYANN	NNTRTTGTAAAYAN	SELEX Yin et al.(2017) FOXJ2_eDBD_HT-SELEX	0.675	0.558
FOXJ2 M09084_2.00	Homo sapiens	WARAYAAAYA	TRTTTRTYTW	Misc Kulakovskiy et al.(2013) FOXJ2_HUMAN.H11MO.0.C	0.675	0.558
Foxj2 M09100_2.00	Mus musculus	WARAYAAAYA	TRTTTRTYTW	Misc Kulakovskiy et al.(2013) FOXJ2_MOUSE.H11MO.0.C	0.675	0.558
FOXJ2 M10527_2.00	Homo sapiens	HHNHMRAYAAAYANHNND	HNNDNTRTTTRTYKDNDD	Transfac Matys et al.(2006) V$FOXJ2_01	0.675	0.558
FOXJ2 M10528_2.00	Homo sapiens	VYMAYAATATTTKN	NMAAATATTRTKRB	Transfac Matys et al.(2006) V$FOXJ2_02	0.675	0.558
FOXJ2 M04810_2.00	Homo sapiens	NTRTTTACAAYANN	NNTRTTGTAAAYAN	SELEX Yin et al.(2017) FOXJ2_eDBD_Methyl-HT-SELEX	0.675	0.558
Foxj2 M01980_2.00	Mus musculus	RTAAACAN	NTGTTTAY	PBM Weirauch et al.(2014) pTH6638	0.675	0.535
FOXG1 M01978_2.00	Homo sapiens	RTAAACAH	DTGTTTAY	PBM Weirauch et al.(2014) pTH5501	0.674	0.605
Foxg1 M00791_2.00	Mus musculus	NNNNMHAYAN	NTRTDKNNNN	PBM Weirauch et al.(2013) pTH2846	0.674	0.605
FOXG1 M03032_2.00	Homo sapiens	RTAAACAATDGTAAACA	TGTTTACHATTGTTTAY	SELEX Jolma et al.(2013) FOXG1_1	0.674	0.605
FOXG1 M03033_2.00	Homo sapiens	RCGGACACAATR	YATTGTGTCCGY	SELEX Jolma et al.(2013) FOXG1_2	0.674	0.605
Foxg1 M03052_2.00	Mus musculus	ATAAACAAVTGTMAACA	TGTTKACABTTGTTTAT	SELEX Jolma et al.(2013) Foxg1_1	0.674	0.605
Foxg1 M03053_2.00	Mus musculus	MHGGACACAATC	GATTGTGTCCDK	SELEX Jolma et al.(2013) Foxg1_2	0.674	0.605
Foxg1 M03054_2.00	Mus musculus	GTAAACA	TGTTTAC	SELEX Jolma et al.(2013) Foxg1_3	0.674	0.605
FOXG1 M04839_2.00	Homo sapiens	NACRYMMACAH	DTGTKKRYGTN	SELEX Yin et al.(2017) FOXG1_eDBD_HT-SELEX	0.674	0.605
FOXG1 M04840_2.00	Homo sapiens	HRCGYMAACAH	DTGTTKRCGYD	SELEX Yin et al.(2017) FOXG1_eDBD_Methyl-HT-SELEX	0.674	0.605
Foxo6 M00798_2.00	Mus musculus	NNNNHHRYDN	NHRYDDNNNN	PBM Weirauch et al.(2013) pTH3477	0.673	0.465
FOXO6 M03049_2.00	Homo sapiens	GTAAACATGTTTAC	GTAAACATGTTTAC	SELEX Jolma et al.(2013) FOXO6_1	0.673	0.465
FOXO6 M03050_2.00	Homo sapiens	GTAAACA	TGTTTAC	SELEX Jolma et al.(2013) FOXO6_2	0.673	0.465
FOXO6 M03051_2.00	Homo sapiens	TTTCCCCACACGMC	GKCGTGTGGGGAAA	SELEX Jolma et al.(2013) FOXO6_3	0.673	0.465
Foxo3 M00797_2.00	Mus musculus	RTMAACAN	NTGTTKAY	PBM Weirauch et al.(2013) pTH3749	0.670	0.465
FOXO3 M03019_2.00	Homo sapiens	GTAAACATGTTTAC	GTAAACATGTTTAC	SELEX Jolma et al.(2013) FOXO3_1	0.670	0.465
FOXO3 M03020_2.00	Homo sapiens	GTAAACAW	WTGTTTAC	SELEX Jolma et al.(2013) FOXO3_2	0.670	0.465
FOXO3 M03021_2.00	Homo sapiens	KTTCCCCACAC	GTGTGGGGAAM	SELEX Jolma et al.(2013) FOXO3_3	0.670	0.465
FOXO3 M04813_2.00	Homo sapiens	HHCCCCACACN	NGTGTGGGGDD	SELEX Yin et al.(2017) FOXO3_eDBD_HT-SELEX	0.670	0.465
FOXO3 M09087_2.00	Homo sapiens	DGTAAACAVV	BBTGTTTACH	Misc Kulakovskiy et al.(2013) FOXO3_HUMAN.H11MO.0.B	0.670	0.465
Foxo3 M09110_2.00	Mus musculus	DGTAAACAVV	BBTGTTTACH	Misc Kulakovskiy et al.(2013) FOXO3_MOUSE.H11MO.0.B	0.670	0.465
FOXO3 M10537_2.00	Homo sapiens	WAHGTAAACAAVND	HNBTTGTTTACDWW	Transfac Matys et al.(2006) V$FOXO3_01	0.670	0.465
FOXO3 M10538_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXO3A_Q1	0.670	0.465
FOXO3 M10539_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXO3A_Q3	0.670	0.465
FOXO3 M04814_2.00	Homo sapiens	NHCCCCACACV	BGTGTGGGGDN	SELEX Yin et al.(2017) FOXO3_eDBD_Methyl-HT-SELEX	0.670	0.465
FOXP1 M00836_2.00	Homo sapiens	NRTMAACANN	NNTGTTKAYN	PBM Gabut et al.(2011) pEX0123	0.670	0.395
FOXP1 M00837_2.00	Homo sapiens	DGTAAACAA	TTGTTTACH	PBM Gabut et al.(2011) pEX0124	0.670	0.395
FOXP1 M01976_2.00	Homo sapiens	RTAAACAA	TTGTTTAY	PBM Weirauch et al.(2014) pTH5656	0.670	0.395
Foxp1 M00793_2.00	Mus musculus	NRTMAAYAN	NTRTTKAYN	PBM Weirauch et al.(2013) pTH3855	0.670	0.395
FOXP1 M04811_2.00	Homo sapiens	NTGTTTRYNRTNNNNNNBNAYRVWMAACAN	NTGTTKWBYRTNVNNNNNNAYNRYAAACAN	SELEX Yin et al.(2017) FOXP1_eDBD_HT-SELEX	0.670	0.395
FOXP1 M08115_2.00	Homo sapiens	NDGTAAACAVNN	NNBTGTTTACHN	ChIP-seq Mathelier et al.(2014) MA0481.2	0.670	0.395
FOXP1 M09086_2.00	Homo sapiens	RKAAACAVM	KBTGTTTMY	Misc Kulakovskiy et al.(2013) FOXP1_HUMAN.H11MO.0.A	0.670	0.395
FOXP1 M09541_2.00	Homo sapiens	NDGTAAACAVNN	NNBTGTTTACHN	Misc Heinz et al.(2010) H9-FOXP1_GSE31006	0.670	0.395
FOXP1 M10536_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXP1_01	0.670	0.395
FOXP1 M04812_2.00	Homo sapiens	NTGTTTRYBRTNNNNNNBNAYRVWMAACAH	DTGTTKWBYRTNVNNNNNNAYVRYAAACAN	SELEX Yin et al.(2017) FOXP1_eDBD_Methyl-HT-SELEX	0.670	0.395
Foxp2 M00792_2.00	Mus musculus	RTAAACAD	HTGTTTAY	PBM Weirauch et al.(2013) pTH1288	0.665	0.395
FOXP2 M05866_2.00	Homo sapiens	RTAAAYAWNN	NNWTRTTTAY	SMiLE-seq Isakova et al.(2017) FOXP2	0.665	0.395
FOXP2 M08116_2.00	Homo sapiens	NDGTAAACAVN	NBTGTTTACHN	ChIP-seq Mathelier et al.(2014) MA0593.1	0.665	0.395
FOXP2 M09089_2.00	Homo sapiens	DGTAAACAV	BTGTTTACH	Misc Kulakovskiy et al.(2013) FOXP2_HUMAN.H11MO.0.C	0.665	0.395
Foxp2 M09101_2.00	Mus musculus	NGTAAACAN	NTGTTTACN	Misc Kulakovskiy et al.(2013) FOXP2_MOUSE.H11MO.0.A	0.665	0.395
FoxP M03753_2.00	Drosophila melanogaster	AAACAACAACAA	TTGTTGTTGTTT	SELEX Nitta et al.(2015) CG16899_1	0.665	0.407
FoxP M06201_2.00	Drosophila melanogaster	VRTAAACAA	TTGTTTAYB	B1H Zhu et al.(2011) CG16899_SANGER_5_FBgn0037735	0.665	0.407
FoxP M06202_2.00	Drosophila melanogaster	VNNVBBAAAAAAAD	HTTTTTTTVVBNNB	B1H Zhu et al.(2011) CG2052_SANGER_2.5_FBgn0039905	0.665	0.407
FoxP M06203_2.00	Drosophila melanogaster	NNNNNRAAAAAAWNN	NNWTTTTTTYNNNNN	B1H Zhu et al.(2011) CG2052_SOLEXA_2.5_FBgn0039905	0.665	0.407
CBG14280 M01974_2.00	Caenorhabditis briggsae	RTAAACAN	NTGTTTAY	PBM Weirauch et al.(2014) pTH6734	0.664	0.535
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
MDOA009504-PA	Forkhead	522	612	KPPYSYAQLIVQAISAAPDKQLTLSGIYSFIVKHYPYYRKETNKGWQNSIRHNLSLNRYFIKVARSQDEPGKGSFWRIDPDSGAKLIDHSY

Links
Other Forkhead family TFs
Other *Musca domestica* TFs

1255 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
FOXG_04965	Fusarium oxysporum	FOXG_04965	N	0.000
FPSE_07445	Fusarium pseudograminearum	FPSE_07445	N	0.000
NechaG85633	Fusarium solani	NechaG85633	N	0.000
FVEG_03169	Fusarium verticillioides	FVEG_03169	N	0.000
fgenesh1_pg.sca_82_chr10_2_0000236	Nectria haematococca	fgenesh1_pg.sca_82_chr10_2_0000236	N	0.000
CY34DRAFT_799669	Suillus luteus	CY34DRAFT_799669	N	0.000

MDOA009504 (Musca domestica) Forkhead

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1255 Related TFs

MDOA009504 **(Musca domestica)
Forkhead**