CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

NBR_0000286701 *(Nippostrongylus brasiliensis)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00250 (Forkhead)	IPR001766	NBR_0000286701	T190818_2.00	WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Foxa2 M00162_2.00	Mus musculus	GTAAAYAW	WTRTTTAC	PBM Badis et al.(2009) Foxa2_2830	0.812	0.837
FOXA2 M04815_2.00	Homo sapiens	NHVNRYMAATATTKACNNDN	NHNNGTMAATATTKRYNBDN	SELEX Yin et al.(2017) FOXA2_eDBD_HT-SELEX	0.812	0.837
Foxa2 M08121_2.00	Mus musculus	TRTTTACWYWDN	NHWRWGTAAAYA	ChIP-seq Mathelier et al.(2014) MA0047.2	0.812	0.837
FOXA2 M07959_2.00	Homo sapiens	NNWRWGYAAAYANNN	NNNTRTTTRCWYWNN	ChIP-seq Gerstein et al.(2012) HepG2_FOXA2_HudsonAlpha	0.812	0.837
FOXA2 M09088_2.00	Homo sapiens	NHWRWGTAAACA	TGTTTACWYWDN	Misc Kulakovskiy et al.(2013) FOXA2_HUMAN.H11MO.0.A	0.812	0.837
Foxa2 M09104_2.00	Mus musculus	BNHTRTTKACWYW	WRWGTMAAYADNV	Misc Kulakovskiy et al.(2013) FOXA2_MOUSE.H11MO.0.A	0.812	0.837
FOXA2 M09542_2.00	Homo sapiens	WVWGTMAACANV	BNTGTTKACWBW	Misc Heinz et al.(2010) Liver-Foxa2_GSE25694	0.812	0.837
FOXA2 M10540_2.00	Homo sapiens	WAARYAAAYADKNMV	BKNMHTRTTTRYTTW	Transfac Matys et al.(2006) V$HNF3B_01	0.812	0.837
FOXA2 M10541_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3B_Q6	0.812	0.837
AAA20679 M10575_2.00	Xenopus laevis	WNWGTMAACAWWMW	WKWWTGTTKACWNW	Transfac Matys et al.(2006) V$XFD3_01	0.812	0.837
FOXA2 M04816_2.00	Homo sapiens	NWRNRYMAATATTKACWNWN	NWNWGTMAATATTKRYNYWN	SELEX Yin et al.(2017) FOXA2_eDBD_Methyl-HT-SELEX	0.812	0.837
pha-4 M08123_2.00	Caenorhabditis elegans	WRWGYAAAYA	TRTTTRCWYW	ChIP-seq Mathelier et al.(2014) MA0546.1	0.794	0.872
pha-4 M08201_2.00	Caenorhabditis elegans	GTAAACAR	YTGTTTAC	ChIP-seq Contrino et al.(2012) Mw164	0.794	0.872
pha-4 M09548_2.00	Caenorhabditis elegans	RYAMAYAN	NTRTKTRY	Misc Heinz et al.(2010) cElegans-Embryos-PHA4_modEncode	0.794	0.872
FOXA1 M04817_2.00	Homo sapiens	NTRTKTACMYWN	NWRKGTAMAYAN	SELEX Yin et al.(2017) FOXA1_eDBD_HT-SELEX	0.791	0.837
FOXA1 M04819_2.00	Homo sapiens	BVYTAWGTAAACAAWN	NWTTGTTTACWTARBV	SELEX Yin et al.(2017) FOXA1_FL_HT-SELEX_1	0.791	0.837
FOXA1 M04820_2.00	Homo sapiens	HWRWRYAAATATTKACWYWR	YWRWGTMAATATTTRYWYWD	SELEX Yin et al.(2017) FOXA1_FL_HT-SELEX_2	0.791	0.837
FOXA1 M08117_2.00	Homo sapiens	NNNNTRTTTACWYWD	HWRWGTAAAYANNNN	ChIP-seq Mathelier et al.(2014) MA0148.3	0.791	0.837
FOXA1 M07960_2.00	Homo sapiens	NNYWRWGYAAACANN	NNTGTTTRCWYWRNN	ChIP-seq Gerstein et al.(2012) ECC-1_FOXA1_HudsonAlpha	0.791	0.837
FOXA1 M07961_2.00	Homo sapiens	HWRWGTAAAYA	TRTTTACWYWD	ChIP-seq Gerstein et al.(2012) HepG2_FOXA1_HudsonAlpha	0.791	0.837
FOXA1 M07962_2.00	Homo sapiens	NWVWGTAAACA	TGTTTACWBWN	ChIP-seq Gerstein et al.(2012) T-47D_FOXA1_HudsonAlpha	0.791	0.837
FOXA1 M08199_2.00	Homo sapiens	BWRDGTAAACANN	NNTGTTTACHYWV	ChIP-seq Contrino et al.(2012) Mv69	0.791	0.837
FOXA1 M08028_2.00	Homo sapiens	WRWRYAAAYA	TRTTTRYWYW	ChIP-seq Chen et al.(2011) GSE15244_FoxA1	0.791	0.837
FOXA1 M09090_2.00	Homo sapiens	VHWRWGTAAACA	TGTTTACWYWDB	Misc Kulakovskiy et al.(2013) FOXA1_HUMAN.H11MO.0.A	0.791	0.837
Foxa1 M09103_2.00	Mus musculus	TRTTKACWYW	WRWGTMAAYA	Misc Kulakovskiy et al.(2013) FOXA1_MOUSE.H11MO.0.A	0.791	0.837
FOXA1 M09544_2.00	Homo sapiens	WGCCAARRYAAAYANN	NNTRTTTRYYTTGGCW	Misc Heinz et al.(2010) LNCAP-FOXA1_GSE27824_2	0.791	0.837
FOXA1 M09543_2.00	Homo sapiens	WRWGTAAACA	TGTTTACWYW	Misc Heinz et al.(2010) LNCAP-FOXA1_GSE27824_1	0.791	0.837
FOXA1 M09545_2.00	Homo sapiens	WRWGTAAAYA	TRTTTACWYW	Misc Heinz et al.(2010) MCF7-FOXA1_GSE26831	0.791	0.837
FOXA1 M10542_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXA1_02	0.791	0.837
FOXA1 M10543_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXA1_03	0.791	0.837
FOXA1 M10544_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3A_01	0.791	0.837
FOXA1 M10545_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3ALPHA_Q6	0.791	0.837
FOXA1 M10546_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3A_Q6	0.791	0.837
FOXA1 M04818_2.00	Homo sapiens	NWRDGYMAAYAW	WTRTTKRCHYWN	SELEX Yin et al.(2017) FOXA1_eDBD_Methyl-HT-SELEX	0.791	0.837
FOXA1 M04821_2.00	Homo sapiens	BVYTAWGTAAACAAWV	BWTTGTTTACWTARBV	SELEX Yin et al.(2017) FOXA1_FL_Methyl-HT-SELEX_1	0.791	0.837
FOXA1 M04822_2.00	Homo sapiens	YTRWRYAAATATTTACWYAR	YTRWGTAAATATTTRYWYAR	SELEX Yin et al.(2017) FOXA1_FL_Methyl-HT-SELEX_2	0.791	0.837
FOXA3 M04831_2.00	Homo sapiens	BVYTAWGTAAACAAAN	NTTTGTTTACWTARBV	SELEX Yin et al.(2017) FOXA3_FL_HT-SELEX_1	0.783	0.814
FOXA3 M04832_2.00	Homo sapiens	HWRWGYAAATATTKACWYWD	HWRWGTMAATATTTRCWYWD	SELEX Yin et al.(2017) FOXA3_FL_HT-SELEX_2	0.783	0.814
FOXA3 M09096_2.00	Homo sapiens	HWRWGTMAAYADN	NHTRTTKACWYWD	Misc Kulakovskiy et al.(2013) FOXA3_HUMAN.H11MO.0.B	0.783	0.814
Foxa3 M09106_2.00	Mus musculus	HWRWGTMAAYADN	NHTRTTKACWYWD	Misc Kulakovskiy et al.(2013) FOXA3_MOUSE.H11MO.0.A	0.783	0.814
FOXA3 M10557_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3G_Q4	0.783	0.814
FOXA3 M04833_2.00	Homo sapiens	CVYTAWGTAAACAAWB	VWTTGTTTACWTARBG	SELEX Yin et al.(2017) FOXA3_FL_Methyl-HT-SELEX_1	0.783	0.814
FOXA3 M04834_2.00	Homo sapiens	HWRWGYAAATATTKACWYWD	HWRWGTMAATATTTRCWYWD	SELEX Yin et al.(2017) FOXA3_FL_Methyl-HT-SELEX_2	0.783	0.814
Q2L6N7_PELSI M01990_2.00	Trionyx sinensis	KTRTTTACA	TGTAAAYAM	PBM Weirauch et al.(2014) pTH5334	0.779	0.779
fkh M03734_2.00	Drosophila melanogaster	WRWGYMAATATTKRCWYW	WRWGYMAATATTKRCWYW	SELEX Nitta et al.(2015) fkh_1	0.752	0.837
fkh M03735_2.00	Drosophila melanogaster	HWASAATAAYAWT	AATRTTATTSTWD	SELEX Nitta et al.(2015) fkh_2	0.752	0.837
fkh M06473_2.00	Drosophila melanogaster	NTRDDYAAACA	TGTTTRHHYAN	B1H Mathelier et al.(2014) MA0446.1	0.752	0.837
fkh M06194_2.00	Drosophila melanogaster	NTRDDYAAACA	TGTTTRHHYAN	B1H Zhu et al.(2011) fkh_NAR_FBgn0000659	0.752	0.837
fkh M08200_2.00	Drosophila melanogaster	NTRDDYAAACA	TGTTTRHHYAN	ChIP-seq Contrino et al.(2012) Mf15	0.752	0.837
fkh M09668_2.00	Drosophila melanogaster	TRTTTRCAHAAG	CTTDTGYAAAYA	Misc Kulakovskiy et al.(2009) fkh	0.752	0.837
fd64A M06197_2.00	Drosophila melanogaster	KVWAAACA	TGTTTWBM	B1H Zhu et al.(2011) fd64A_SANGER_5_FBgn0004895	0.673	0.616
croc M03744_2.00	Drosophila melanogaster	WRYGTMAACAH	DTGTTKACRYW	SELEX Nitta et al.(2015) croc_1	0.664	0.651
croc M10571_2.00	Drosophila melanogaster	HWNARTAAATAKNNNV	BNNNMTATTTAYYNWD	Transfac Matys et al.(2006) I$CROC_01	0.664	0.651
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
NBR_0000286701-mRNA-1	Forkhead	132	221	KPPYSYISLITMAIQHSANHKMTLSEIYNWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFVKIARTPDKPGKGSFWTLHELCGNMFENGCY

Links
Other Forkhead family TFs
Other *Nippostrongylus brasiliensis* TFs

400 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
TEAD1	Anolis carolinensis	ENSACAG00000004642	I	0.000
ENSAMXG00000010081	Astyanax mexicanus	ENSAMXG00000010081	I	0.000
TEAD1	Callithrix jacchus	ENSCJAG00000010263	I	0.000
TEAD1	Canis familiaris	ENSCAFG00000007976	I	0.000
TEAD1	Choloepus hoffmanni	ENSCHOG00000001087	N	0.000
Tead1	Dipodomys ordii	ENSDORG00000013529	N	0.000
TEAD1	Equus caballus	ENSECAG00000008332	I	0.000
TEAD1	Erinaceus europaeus	ENSEEUG00000012549	N	0.000
TEAD1	Gallus gallus	ENSGALG00000005415	I	0.000
tead1b	Gasterosteus aculeatus	ENSGACG00000015715	I	0.000
TEAD1	Gorilla gorilla	ENSGGOG00000003412	N	0.000
TEAD1	Homo sapiens	ENSG00000187079	D	0.000
TEAD4	Homo sapiens	ENSG00000197905	D	0.000
ENSLOCG00000004054	Lepisosteus oculatus	ENSLOCG00000004054	I	0.000
ENSP00000355332	Macaca fascicularis	ENSP00000355332	N	0.000
TEAD1	Macaca mulatta	ENSMMUG00000010875	N	0.000
ENSMEUG00000006301	Macropus eugenii	ENSMEUG00000006301	N	0.000
Tead4	Mus musculus	ENSMUSG00000030353	D	0.000
Tead1	Mus musculus	ENSMUSG00000055320	D	0.000
ENSNLEG00000017672	Nomascus leucogenys	ENSNLEG00000017672	N	0.000
ENSONIG00000005991	Oreochromis niloticus	ENSONIG00000005991	N	0.000
TEAD1	Oryctolagus cuniculus	ENSOCUG00000007955	I	0.000
tead1b	Oryzias latipes	ENSORLG00000007439	I	0.000
TEAD1	Pan troglodytes	ENSPTRG00000039896	N	0.000
ENSPFOG00000012196	Poecilia formosa	ENSPFOG00000012196	N	0.000
ENSPPYG00000003475	Pongo abelii	ENSPPYG00000003475	I	0.000
TEAD1	Pteropus vampyrus	ENSPVAG00000001503	I	0.000
Tead1	Rattus norvegicus	ENSRNOG00000015488	I	0.000
SMAR011013	Strigamia maritima	SMAR011013	I	0.000
ENSTSYG00000001514	Tarsius syrichta	ENSTSYG00000001514	N	0.000
TEAD1	Tursiops truncatus	ENSTTRG00000006621	N	0.000
TEAD1	Vicugna pacos	ENSVPAG00000005288	N	0.000
ENSXMAG00000003088	Xiphophorus maculatus	ENSXMAG00000003088	N	0.000

NBR_0000286701 (Nippostrongylus brasiliensis) Forkhead

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

400 Related TFs

NBR_0000286701 **(Nippostrongylus brasiliensis)
Forkhead**