Bo8g010900 (Brassica oleracea)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 Bo8g010900 T191912_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.856 0.917
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.856 0.917
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.837 0.833
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.837 0.778
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.832 0.722
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.823 0.778
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.823 0.778
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.823 0.778
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.823 0.778
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.823 0.778
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.823 0.778
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.819 0.750
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.819 0.750
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.819 0.750
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.819 0.750
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.819 0.750
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.819 0.694
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.819 0.694
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo8g010900.1 GATA 206 241

Links

Other GATA family TFs
Other Brassica oleracea TFs

603 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_29010 Aegilops tauschii F775_29010 N
BRADI1G64060 Brachypodium distachyon BRADI1G64060 N
BRADI1G43900 Brachypodium distachyon BRADI1G43900 N
evm.TU.supercontig_49.112 Carica papaya evm.TU.supercontig_49.112 N
Gorai.010G045700 Gossypium raimondii Gorai.010G045700 N
Gorai.002G219800 Gossypium raimondii Gorai.002G219800 N
MLOC_64008 Hordeum vulgare MLOC_64008 N
Pavir.J20659 Panicum virgatum Pavir.J20659 N
Pavir.Da01921 Panicum virgatum Pavir.Da01921 N
POPTR_0002s09130 Populus trichocarpa POPTR_0002s09130 N
SapurV1A.0010s0460 Salix purpurea SapurV1A.0010s0460 N
Si036527m.g Setaria italica Si036527m.g N
Si006667m.g Setaria italica Si006667m.g N
Solyc04g072460.2 Solanum lycopersicum Solyc04g072460.2 N
Solyc12g056860.1 Solanum lycopersicum Solyc12g056860.1 N
PGSC0003DMG400016951 Solanum tuberosum PGSC0003DMG400016951 N
Sb01g037050 Sorghum bicolor Sb01g037050 N
TCM_034993 Theobroma cacao TCM_034993 N
Traes_2AL_BD0C7A9A5 Triticum aestivum Traes_2AL_BD0C7A9A5 N
Traes_2BL_9528AAD7C Triticum aestivum Traes_2BL_9528AAD7C N
Traes_4AS_6EDD5ACF7 Triticum aestivum Traes_4AS_6EDD5ACF7 N
Traes_4BL_DAFEC95DD Triticum aestivum Traes_4BL_DAFEC95DD N
Traes_4DL_73DC40D7B Triticum aestivum Traes_4DL_73DC40D7B N
TRIUR3_28368 Triticum urartu TRIUR3_28368 N
GRMZM2G174284 Zea mays GRMZM2G174284 N
GRMZM2G056099 Zea mays GRMZM2G056099 N