POPTR_0007s12930 (Populus trichocarpa)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 POPTR_0007s12930 T194891_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA19
M06893_2.00 		Arabidopsis thaliana
BNGATCBGATY
RATCVGATCNV		 Dap-seq
OMalley et al.(2016)
GATA19_col_a 		0.867 1.000
GATA19
M06894_2.00 		Arabidopsis thaliana
HNGATCBGATY
RATCVGATCND		 Dap-seq
OMalley et al.(2016)
GATA19_colamp_a 		0.867 1.000
GATA20
M06884_2.00 		Arabidopsis thaliana
GATCBGAT
ATCVGATC		 Dap-seq
OMalley et al.(2016)
GATA20_col_a 		0.825 0.944
GATA20
M06885_2.00 		Arabidopsis thaliana
HNGATCNGATBND
HNVATCNGATCND		 Dap-seq
OMalley et al.(2016)
GATA20_colamp_a 		0.825 0.944
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0007s12930.1 GATA 138 173

Links

Other GATA family TFs
Other Populus trichocarpa TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000009571 Ailuropoda melanoleuca ENSAMEG00000009571 N 0.000
Alligator_sinensis_CCG018823.1 Alligator sinensis Alligator_sinensis_CCG018823.1 N 0.000
ENSAPLG00000006697 Anas platyrhynchos ENSAPLG00000006697 N 0.000
ZHX3 Anolis carolinensis ENSACAG00000011460 N 0.000
Afo_R009777 Aptenodytes forsteri Afo_R009777 N 0.000
ENSP00000380144-D1 Bos grunniens ENSP00000380144-D1 N 0.000
ZHX3 Bos taurus ENSBTAG00000017594 N 0.000
ZHX3 Callithrix jacchus ENSCJAG00000018012 N 0.000
Aan_R003309 Calypte anna Aan_R003309 N 0.000
ZHX3 Canis familiaris ENSCAFG00000009101 N 0.000
ZHX3 Cavia porcellus ENSCPOG00000002738 N 0.000
Cmyd_10015207 Chelonia mydas Cmyd_10015207 N 0.000
ENSCSAG00000013961 Chlorocebus sabaeus ENSCSAG00000013961 N 0.000
ZHX3 Choloepus hoffmanni ENSCHOG00000009000 N 0.000
ZHX3 Dasypus novemcinctus ENSDNOG00000005387 N 0.000
Zhx3 Dipodomys ordii ENSDORG00000012139 N 0.000
ZHX3 Felis catus ENSFCAG00000009034 N 0.000
ENSFALG00000005566 Ficedula albicollis ENSFALG00000005566 N 0.000
ENSGALG00000027603 Gallus gallus ENSGALG00000027603 N 0.000
ZHX3 Gorilla gorilla ENSGGOG00000008691 N 0.000
ZHX3 Homo sapiens ENSG00000174306 N 0.000
ENSSTOG00000011674 Ictidomys tridecemlineatus ENSSTOG00000011674 N 0.000
ENSLACG00000019016 Latimeria chalumnae ENSLACG00000019016 N 0.000
ENSLOCG00000004596 Lepisosteus oculatus ENSLOCG00000004596 N 0.000
ZHX3 Loxodonta africana ENSLAFG00000022196 N 0.000
ZHX3 Macaca mulatta ENSMMUG00000005904 N 0.000
ZHX3 Monodelphis domestica ENSMODG00000000636 N 0.000
ENSMPUG00000017699 Mustela putorius furo ENSMPUG00000017699 N 0.000
Zhx3 Mus musculus ENSMUSG00000035877 N 0.000
Myotis_brandtii_ZHX3_10025211 Myotis brandtii Myotis_brandtii_ZHX3_10025211 N 0.000
ZHX3 Myotis lucifugus ENSMLUG00000010226 N 0.000
ENSNLEG00000006488 Nomascus leucogenys ENSNLEG00000006488 N 0.000
ZHX3 Ochotona princeps ENSOPRG00000014931 N 0.000
Ogr10588 Ophisaurus gracilis Ogr10588 N 0.000
ZHX3 Ornithorhynchus anatinus ENSOANG00000014351 N 0.000
ZHX3 Oryctolagus cuniculus ENSOCUG00000006439 N 0.000
ZHX3 Otolemur garnettii ENSOGAG00000013363 N 0.000
ZHX3 Pan troglodytes ENSPTRG00000013501 N 0.000
ENSPANG00000023855 Papio anubis ENSPANG00000023855 N 0.000
ENSPSIG00000010741 Pelodiscus sinensis ENSPSIG00000010741 N 0.000
Pvit_08734 Pogona vitticeps Pvit_08734 N 0.000
ENSPPYG00000011012 Pongo abelii ENSPPYG00000011012 N 0.000
Zhx3 Rattus norvegicus ENSRNOG00000027988 N 0.000
ZHX3 Sorex araneus ENSSARG00000005424 N 0.000
ZHX3 Taeniopygia guttata ENSTGUG00000004817 N 0.000
ZHX3 Tursiops truncatus ENSTTRG00000002687 N 0.000