POPTR_0008s22950 (Populus trichocarpa)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 POPTR_0008s22950 T194894_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.841 0.889
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.821 0.889
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.821 0.889
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s22950.1 GATA 29 64

Links

Other GATA family TFs
Other Populus trichocarpa TFs

143 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CpipJ_CPIJ011193 Culex pipiens CpipJ_CPIJ011193 N 0.000
CPIJ011193 Culex quinquefasciatus CPIJ011193 N 0.000
GF12873 Drosophila ananassae FBgn0089907 N 0.000
GI18846 Drosophila mojavensis FBgn0141585 N 0.000
GA18992 Drosophila pseudoobscura FBgn0078991 N 0.000
GD11808 Drosophila simulans FBgn0183547 N 0.000
GJ21880 Drosophila virilis FBgn0208997 N 0.000
LLOJ009211 Lutzomyia longipalpis LLOJ009211 N 0.000
MDOA002793 Musca domestica MDOA002793 N 0.000