POPTR_0009s12620 (Populus trichocarpa)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 POPTR_0009s12620 T194895_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.857 0.833
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.857 0.833
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.853 0.889
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.853 0.889
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.847 0.806
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.847 0.806
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.847 0.806
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.847 0.806
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.839 0.889
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.837 0.833
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.833 0.778
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.832 0.806
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.832 0.778
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.832 0.778
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.832 0.778
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.819 0.722
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.819 0.722
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.819 0.722
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s12620.1 GATA 248 283

Links

Other GATA family TFs
Other Populus trichocarpa TFs

612 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_13070 Aegilops tauschii F775_13070 N
F775_16499 Aegilops tauschii F775_16499 N
F775_16500 Aegilops tauschii F775_16500 N
F775_17151 Aegilops tauschii F775_17151 N
F775_18370 Aegilops tauschii F775_18370 N
F775_18978 Aegilops tauschii F775_18978 N
F775_27817 Aegilops tauschii F775_27817 N
F775_01974 Aegilops tauschii F775_01974 N
MLOC_4214 Hordeum vulgare MLOC_4214 N
MLOC_56903 Hordeum vulgare MLOC_56903 N
Traes_6BS_AEF9F3C00 Triticum aestivum Traes_6BS_AEF9F3C00 N
Traes_6AS_073DEE100 Triticum aestivum Traes_6AS_073DEE100 N
Traes_6BS_C3247654A Triticum aestivum Traes_6BS_C3247654A N
Traes_6BS_E71FD70EE1 Triticum aestivum Traes_6BS_E71FD70EE1 N
Traes_6DS_2185308F3 Triticum aestivum Traes_6DS_2185308F3 N
Traes_6DS_3D1A837E3 Triticum aestivum Traes_6DS_3D1A837E3 N
Traes_6DS_48337A953 Triticum aestivum Traes_6DS_48337A953 N
Traes_6DS_5878FA87F Triticum aestivum Traes_6DS_5878FA87F N
Traes_6DS_7876A591C Triticum aestivum Traes_6DS_7876A591C N
Traes_6DS_87E97B55C Triticum aestivum Traes_6DS_87E97B55C N
Traes_6BS_938E60C80 Triticum aestivum Traes_6BS_938E60C80 N
Traes_6BS_3A00751B5 Triticum aestivum Traes_6BS_3A00751B5 N
Traes_6AS_D5A6B2CDD Triticum aestivum Traes_6AS_D5A6B2CDD N
Traes_6AS_B24138E62 Triticum aestivum Traes_6AS_B24138E62 N
Traes_5DL_A9969D596 Triticum aestivum Traes_5DL_A9969D596 N
Traes_5AL_DB9E0AA8D Triticum aestivum Traes_5AL_DB9E0AA8D N
Traes_4AL_3A009739E Triticum aestivum Traes_4AL_3A009739E N
Traes_1DL_5E046EFA0 Triticum aestivum Traes_1DL_5E046EFA0 N
Traes_1BL_A8B8F33D9 Triticum aestivum Traes_1BL_A8B8F33D9 N
Traes_1AL_3C796C3D3 Triticum aestivum Traes_1AL_3C796C3D3 N
TRIUR3_06575 Triticum urartu TRIUR3_06575 N
TRIUR3_26568 Triticum urartu TRIUR3_26568 N
TRIUR3_31592 Triticum urartu TRIUR3_31592 N