cassava15577.m1 (Manihot esculenta)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 cassava15577.m1 T196006_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.838 0.833
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.818 0.833
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.818 0.833
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava15577.m1 GATA 9 44

Links

Other GATA family TFs
Other Manihot esculenta TFs

147 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI3G48310 Brachypodium distachyon BRADI3G48310 N 0.000
MLOC_80133 Hordeum vulgare MLOC_80133 N 0.000
OB0054G10020 Oryza brachyantha OB0054G10020 N 0.000
ORGLA02G0203300 Oryza glaberrima ORGLA02G0203300 N 0.000
BGIOSGA008594 Oryza indica BGIOSGA008594 N 0.000
OS02G0608100 Oryza sativa OS02G0608100 N 0.000
Pavir.Ab02304 Panicum virgatum Pavir.Ab02304 N 0.000
Pavir.J27368 Panicum virgatum Pavir.J27368 N 0.000
Si013246m.g Setaria italica Si013246m.g N 0.000
Si015741m.g Setaria italica Si015741m.g N 0.000
Sb04g025520 Sorghum bicolor Sb04g025520 N 0.000
Traes_4BL_208AF4C7D Triticum aestivum Traes_4BL_208AF4C7D N 0.000
Traes_4DL_A9DA4DCF1 Triticum aestivum Traes_4DL_A9DA4DCF1 N 0.000
TRIUR3_03147 Triticum urartu TRIUR3_03147 N 0.000
GRMZM2G117108 Zea mays GRMZM2G117108 N 0.000